LOC120557336 (LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118)


Basic Information

Item Value
gene id LOC120557336
gene name LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11385184 ~ 11394398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU50377
aaacaacctGGCCAGAGTGTTTGGCCCTACTCTTGTGGGTCATGCTGTTCCCGACCCAGACCCTATGACTATCCTGCATGACACTAACAGGCAACCAAGGGTTGTAGAGCGCCTGCTCAGCATTCCGGGAAAGTACTGGGACCAGTTTGCTTATCCAGACAATACAGGCATGGACAATGCTTGCCACACTGATACTCCAGACCACCAAGTGAGCATATTGGGACCACTGACCACTCCAGAGCACCAGATGATGTCCAAAACACCCTCCTCCAGCTCGCTGTCCCAGCGCATGAGACAGACCCTCTCCAGCACCACCATATTTGGGAGCAAAAGCAAAGCATCAGCTGCCTCTAACCGCCAGGGCACCTTCTTCGCCTCTCCACAGCTGAAGTAATGGCaaaggagaaataaaaaatagccaTATTGTACTTACTGCAATAACTGAATATATATTCACATAATCATGTGGGAAAACTACTGTGcaattttaacatgttttatcaCTGAGTTTTTTGTATTCAAGTATTTTATTCAAGACTTTCTTACAAGAGTTTTCCTCTGAAAAGATTCCTGCATGAgtgtctcagtttgtttttatatcTTTGATTACTAATGATTTATTATTGACCAAAACTGTGGTGCCATCTATGTGATTGTAAGAGGTTTGAAGGCTTTGACCAAGCAACCATTCTATACCAATTCAAGGATCATTATCTTCTGATTTGTGTTAAACACGTTGGTTTGATGTTAAAAATCTATGCATTCACTGGTGTAGGTCCGTCTTTGAACCTGTGGTTGTAACCACAGCGACGGGGGTGCTCAAGCACACGTGAAATGCACAGCTGCATTGGACAAAGAGGGAATAAATTGTATTATTGGCcagtgtctctttgtcttttggcATTGGTTGCCTTGTCATTGTCCTGAagacattgttttgttttcatgatttgacttttttttatatatatatatatttatgttgatTGTGTGCTATGATGTATACcaattatgacaatttatatATCTTAACAATACTGCAATTTAAACACTGATACTGAATGGGAATTATGTTGCATATTGCACTATGTAACAATCTGAGTCAATGTGTATTCTACCTGGGAATACACGCCACTAGAGGTTGCTGTTGCACCACTTTTGATATGCAAGCCTTCGCCAATGAAGAGGATCTACTGTATGTTATGCACACAACCAGTCAGTAATGCTGACACTGAAAACAATTAACAGGTCATTGGGAAAACTGTTATTCATGTGACCAAGGACACTTTAAGTTAATATTTCTGTGGGGTCatcacaaaataaaacctgGAACTAATTTAAGTTATGAACGAATATAGATTTGCATGCACACACTATTTTAAATATTGGTATTAACAGTGGCTTTCTTGTACAGTTGCATCACCAGTAATGCACAAGAAGGAACGCTTCCACTGAGGAAAtttcctctctgctgctctcactGTCACCCTTTAGACACTCCAGATTTGAGAGTGATGATGACATTATTTACTAAGTATTAATTATTGAGGAGAAATGTTTGTTGACAAAAAATGGATTAGTCATTAGAACCATGTTTTGCCTGCCAATTAAGAAATGTGTATCATTTTGAGGTTGTAAAACTCCAGTAATACTacattatgttttatatattcTTCTACATGTATTCCATTATGTGGTTCTAGTTCTCTAATGAAATATTGTCTAACTGATGTTACTTTCACCAAAGATTTTGTGGACTGAATGTAAAACTTAATTTCTTTGTC
>XM_039797570.1
GAAAACCGGCGCTGATTTTGAACTTTGAAGAAGAATGTGCAAACTTTATCAGACAGGTGTGGCTCTGCTGTTGGTGGTGTGGGAATAAACCATCTAACATCTGCTTTTAACATCGGAACTTGTTACATTACATGCCAGCCCTACTCCTACTACAGGAAATCTATTGCACATTAGCTGCAGTAAGACACGATGGAGTCGTCTGTTATGAACCTGTACAACCAGTTCCAGAATCTGAGAGCCCAGGTGGACGGTCTGAATGAGGGTATTGAACCACAGTTCCTCAAGATGGCAGTGAACTTTGAGGAGTGCCGTAAGAAGTGGCTGCGGGCAGGTGAGGAGCTGGTTTCCTGTAAAGAGGTGCTGGCTAAAGCAGAGACTGAAAGGGGAGCCCTGGAGGTCAGACTGAAGCATGCCCGCAACCAGGTGGATGTGGAGATCCGCCGACGGCAGAAGGCTGAGGCTGTCTATGAGAAGCTGGAACGACAGCTACAGCTGATACGGGAGTTGCTGATATCCGAGAACAATGGTAACAGTGTTCACCTGAGTGAGGAGCAGCGCTCCGCCCTGGCCTTCCTCAGTGCCCACTCACAGGCAGCACAGGCTGCTAAGAGCAACCTCGACTCCAGTCGAAGGTTAACCACCATTGATGAATCAGCTTCTATGCTGTCAGACATCAGCTATGACCAAACGGACGACTCTCTGGACTGGGATTCCTCTGTGATGAAGACTGTAAGACTGCGGAAACGCCAGAAACGACGCTCCTCCAGAAAACTCCTTGAGGTTCCTCCACAGGCAATGAAGAAACCACGCTCCACTGGTCGCACATCAGATAGGGTGAATGAGTCTATAGTGGCCAAAACCACCGTCACTGTGAATGGTGGTGCTGTCGAGGCTGTCTCCACCATTGAAACTGTGCCTTACTGGACACGCAGCAGAAAGAGCGTTGCTCCAGCATGGGGTGATGCAACCACTACTGACCAATCCGAGACTGCCAGTGAGACTCCCAGCACACCAGTCTCTGATTTCCCTGCCCAGCTCCGAACCCCCAGAGCTAATAGAGGAGAAAAGAAGCATCAGTTCATCCCCAAAACCGTGATCAAGTCTGAGTTTTGCGTACCATGTGGAAGAAGAACAAAGTTTGGCAAGATGTACCTCCGCTGCCAGGATTGCAAGATTGTGACCCACCCAGAGTGTCGTGACTGCTGTCCCCTGCCCTGTAATCCCACAGCTGTTGGCACTCCCATCAAGAACACAGAGaGCACCCTGGCTGACTTTGCTCCAGTCACCTCCCCAAAGATCCCGGCTTTGGTTATCTACTGCATTAGGGAGATTGAACAAAGAGGTCTACATGAGGTTGGCCTGTACAGAGTCTCTGGCCAAGAGCGCATGGTGAAAGAGCTGAAGGAGAAGCTGATTAGAGGAAAGACTCTGCCTCCACTTCACAAAGTGGACGACATTAACGTCATTACAGGTGTCCTCAAAGACTTCCTCAGAAACCTGCCAGAGCCGCTGCTCACCTTCCACCTCAACAAAGCCTTCATAGAAGCAGCCGAAATCCAGGATGACGGCAACAGTCTTGCCATGCTGTATCAGACCATCGGCGAGCTGCCTCAACCAAACCGAGACACTCTGGCCTGCCTGATGATCCATCTGCAGAAgagttatttttttttttgtggaaaaaaagaaaacaacctGGCCAGAGTGTTTGGCCCTACTCTTGTGGGTCATGCTGTTCCCGACCCAGACCCTATGACTATCCTGCATGACACTAACAGGCAACCAAGGGTTGTAGAGCGCCTGCTCAGCATTCCGGGAAAGTACTGGGACCAGTTTGCTTATCCAGACAATACAGGCATGGACAATGCTTGCCACACTGATACTCCAGACCACCAAGTGAGCATATTGGGACCACTGACCACTCCAGAGCACCAGATGATGTCCAAAACACCCTCCTCCAGCTCGCTGTCCCAGCGCATGAGACAGACCCTCTCCAGCACCACCATATTTGGGAGCAAAAGCAAAGCATCAGCTGCCTCTAACCGCCAGGGCACCTTCTTCGCCTCTCCACAGCTGAAGTAATGGCaaaggagaaataaaaaatagccaTATTGTACTTACTGCAATAACTGAATATATATTCACATAATCATGTGGGAAAACTACTGTGcaattttaacatgttttatcaCTGAGTTTTTTGTATTCAAGTATTTTATTCAAGACTTTCTTACAAGAGTTTTCCTCTGAAAAGATTCCTGCATGAgtgtctcagtttgtttttatatcTTTGATTACTAATGATTTATTATTGACCAAAACTGTGGTGCCATCTATGTGATTGTAAGAGGTTTGAAGGCTTTGACCAAGCAACCATTCTATACCAATTCAAGGATCATTATCTTCTGATTTGTGTTAAACACGTTGGTTTGATGTTAAAAATCTATGCATTCACTGGTGTAGGTCCGTCTTTGAACCTGTGGTTGTAACCACAGCGACGGGGGTGCTCAAGCACACGTGAAATGCACAGCTGCATTGGACAAAGAGGGAATAAATTGTATTATTGGCcagtgtctctttgtcttttggcATTGGTTGCCTTGTCATTGTCCTGAagacattgttttgttttcatgatttgacttttttttatatatatatatatttatgttgatTGTGTGCTATGATGTATACcaattatgacaatttatatATCTTAACAATACTGCAATTTAAACACTGATACTGAATGGGAATTATGTTGCATATTGCACTATGTAACAATCTGAGTCAATGTGTATTCTACCTGGGAATACACGCCACTAGAGGTTGCTGTTGCACCACTTTTGATATGCAAGCCTTCGCCAATGAAGAGGATCTACTGTATGTTATGCACACAACCAGTCAGTAATGCTGACACTGAAAACAATTAACAGGTCATTGGGAAAACTGTTATTCATGTGACCAAGGACACTTTAAGTTAATATTTCTGTGGGGTCatcacaaaataaaacctgGAACTAATTTAAGTTATGAACGAATATAGATTTGCATGCACACACTATTTTAAATATTGGTATTAACAGTGGCTTTCTTGTACAGTTGCATCACCAGTAATGCACAAGAAGGAACGCTTCCACTGAGGAAAtttcctctctgctgctctcactGTCACCCTTTAGACACTCCAGATTTGAGAGTGATGATGACATTATTTACTAAGTATTAATTATTGAGGAGAAATGTTTGTTGACAAAAAATGGATTAGTCATTAGAACCATGTTTTGCCTGCCAATTAAGAAATGTGTATCATTTTGAGGTTGTAAAACTCCAGTAATACTacattatgttttatatattcTTCTACATGTATTCCATTATGTGGTTCTAGTTCTCTAATGAAATATTGTCTAACTGATGTTACTTTCACCAAAGATTTTGTGGACTGAATGTAAAACTTAATTTCTTTGTCTTAGCTCAAAAAGGATTTACACAAAAGTCCATCATtgagtttaaaataaaacatcaaaagactG

Function

NR:

description
PREDICTED: rac GTPase-activating protein 1-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU50377 False 1784 TUCP 0.38 4 11390739 11394334
XM_039797570.1 True 3536 mRNA 0.44 17 11385184 11394398

Neighbor

gene id symbol gene type direction distance location
LOC120557335 LOC103359258,LOC101476783 coding upstream 3004 11376535 ~ 11382180 (+)
LOC120557333 evc coding upstream 9372 11361406 ~ 11375812 (+)
msx1a msx1 coding upstream 52538 11330556 ~ 11332646 (+)
LOC120558115 NA coding upstream 119114 11263510 ~ 11266070 (+)
LOC120558172 LOC104927939,LOC104961953,LOC100699369,LOC102798792,LOC103359250 coding upstream 141819 11236707 ~ 11243365 (+)
myl9b LOC100697131,LOC101062217,LOC105901900,LOC103386121,LOC106565219 coding downstream 499192 11893590 ~ 11905754 (+)
LOC120557971 kiaa1755 coding downstream 686707 12081105 ~ 12111841 (+)
tgm2b tgm2,LOC103354993 coding downstream 719610 12114008 ~ 12127710 (+)
eif4ba eif4b coding downstream 887279 12281677 ~ 12297035 (+)
LOC120557853 LOC103354987 coding downstream 912963 12307361 ~ 12331774 (+)
G37528 NA non-coding upstream 24936 11359773 ~ 11360248 (+)
G37527 evc2 non-coding upstream 28824 11355629 ~ 11356360 (+)
G37526 NA non-coding upstream 30441 11354276 ~ 11354743 (+)
G37524 evc2 non-coding upstream 35411 11349550 ~ 11349773 (+)
G37523 NA non-coding upstream 35816 11349136 ~ 11349368 (+)
G37553 NA non-coding downstream 13578 11407976 ~ 11416351 (+)
G37560 NA non-coding downstream 27125 11421523 ~ 11421722 (+)
G37561 NA non-coding downstream 27844 11422242 ~ 11422899 (+)
G37567 NA non-coding downstream 120364 11514762 ~ 11515088 (+)
G37588 NA non-coding downstream 264902 11659300 ~ 11676028 (+)
G37525 evc2 other upstream 32797 11352078 ~ 11352387 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other upstream 372275 10997230 ~ 11012909 (+)
glrx glrx other upstream 988997 10387908 ~ 10396187 (+)
G37197 NA other upstream 1075188 10305187 ~ 10309996 (+)
prickle2b prickle2 other upstream 1528528 9760233 ~ 9856656 (+)
G37597 NA other downstream 385780 11780178 ~ 11805394 (+)
G37714 NA other downstream 858668 12253066 ~ 12254974 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other downstream 880362 12274760 ~ 12278624 (+)
G37730 NA other downstream 991773 12386171 ~ 12387175 (+)
cdab cda,LOC103354969,LOC106590862 other downstream 1321762 12716160 ~ 12719493 (+)

Expression


Co-expression Network