cdab (cda,LOC103354969,LOC106590862)


Basic Information

Item Value
gene id cdab
gene name cda,LOC103354969,LOC106590862
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12716160 ~ 12719493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU50865
TGACACATTACCATTTAAAGCTGATCTACAATAGACTCATACACTGTCTCAAAAACAACCTTACAAACCCCAAGAGCAATCATGGACCAAGCCAAGTTCAGCGAGGGTGTGATGCATATTAAGGACCATGGCTCCACACACTTGTCCCAGGAAACAGTCAAAAAGCTGATCCACCAGGCTCAGGAGGCAAAGCAGCAAGCCTACTGCCCTTACAGCAAATTCAGAGTGGGAGCTGCTCTCCTGACTAGACCAGACAACTATTGGTTTACAGGTTGCAATGTGGAGAATGCATGTTACAACCTGGGTGTGTGTGCTGAAAGGAATGCTATCTCAAAGGCAGTTTCTGAAGGCTACAGAAGTTTCAAGGCAATTGCAATTGCCAGTTTGGATCAAACTGCGATGTGTACCTGTCTAAGCCCGACGGCTCATACCTGAAGAAGACGGTGGACGAGCTGCTGCCCGTCTCCTTTGGCCCTGAAGAACTGTCCGTAAAGAAAGTGTTTGACATTCCTAATGAGTACTGAGCCTGTATTGTAGTACAGAACACACACGTGTTGCTTATTTGAACTGCCAGTACATGTACCGTGTATAACATAATGCTGAAAACGTATTCATGTTTAGCAGCAGCTCTATTTATGGTAAATATTTCTTCTTGTGTTATCTGCAGATTTGATTTGTGTGATGTACTTAaatgtattgttattaatatacgCATCAAGCCAATTGCCA
>XM_039797395.1
AGCTGATCTACAATAGACTCATACACTGTCTCAAAAACAACCTTACAAACCCCAAGAGCAATCATGGACCAAGCCAAGTTCAGCGAGGGTGTGATGCATATTAAGGACCATGGCTCCACACACTTGTCCCAGGAAACAGTCAAAAAGCTGATCCACCAGGCTCAGGAGGCAAAGCAGCAAGCCTACTGCCCTTACAGCAAATTCAGAGTGGGAGCTGCTCTCCTGACTAGACCAGACAACTATTGGTTTACAGGTTGCAATGTGGAGAATGCATGTTACAACCTGGGTGTGTGTGCTGAAAGGAATGCTATCTCAAAGGCAGTTTCTGAAGGCTACAGAAGTTTCAAGGCAATTGCAATTGCCAGTGACATGAATGACCAGTTCATCTCCCCGTGTGGTGGTTGCAGACAGTTCATAAGAGAGTTTGGATCAAACTGCGATGTGTACCTGTCTAAGCCCGACGGCTCATACCTGAAGAAGACGGTGGACGAGCTGCTGCCCGTCTCCTTTGGCCCTGAAGAACTGTCCGTAAAGAAAGTGTTTGACATTCCTAATGAGTACTGAGCCTGTATTGTAGTACAGAACACACACGTGTTGCTTATTTGAACTGCCAGTACATGTACCGTGTATAACATAATGCTGAAAACGTATTCATGTTTAGCAGCAGCTCTATTTATGGTAAATATTTCTTCTTGTGTTATCTGCAGATTTGATTTGTGTGATGTACTTAaatgtattgttattaatatacgCATCAAGCCAATTGCCAGACTATAAGCTGGAAAATTCA

Function

symbol description
cda Enables several functions, including cytidine deaminase activity; protein homodimerization activity; and zinc ion binding activity. Involved in cytidine deamination; negative regulation of cell growth; and negative regulation of nucleotide metabolic process. Located in cytosol. Implicated in lung non-small cell carcinoma.

NR:

description
PREDICTED: cytidine deaminase

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
TU50865 False 729 TUCP 0.43 3 12716160 12719472
XM_039797395.1 True 790 mRNA 0.44 4 12716178 12719493

Neighbor

gene id symbol gene type direction distance location
LOC120557860 NA coding upstream 670 12711485 ~ 12715490 (+)
pusl1 pusl1,LOC102782008 coding upstream 41201 12660513 ~ 12674959 (+)
hipk1b LOC103354978 coding upstream 133756 12561829 ~ 12582404 (+)
LOC120557182 camta1 coding upstream 155980 12508013 ~ 12560180 (+)
phf13 phf13 coding upstream 219925 12488697 ~ 12496235 (+)
mapk14b LOC104939458,LOC103028137,LOC108436315,LOC100692416,LOC103386138 coding downstream 35018 12754511 ~ 12776399 (+)
srpk1b LOC102298380,LOC102778566,LOC102206670 coding downstream 57378 12776871 ~ 12809790 (+)
cpne5b LOC103464903,LOC107101079,LOC106917389,LOC106955215,LOC103144351 coding downstream 206220 12925713 ~ 13060775 (+)
gnl3 NA coding downstream 451900 13171393 ~ 13194901 (+)
LOC120558254 NA coding downstream 472285 13191778 ~ 13191911 (+)
G37882 LOC104938800,LOC101487137,LOC105931744,LOC100700351,LOC104958030 non-coding upstream 15481 12697225 ~ 12700679 (+)
G37783 LOC103386132,LOC107099520,LOC105931731,LOC106513340 non-coding upstream 33411 12681128 ~ 12682749 (+)
G37778 NA non-coding upstream 54175 12661771 ~ 12661985 (+)
G37769 NA non-coding upstream 109498 12603798 ~ 12606662 (+)
G37768 NA non-coding upstream 116489 12599440 ~ 12599671 (+)
G37966 NA non-coding downstream 194577 12914070 ~ 12914413 (+)
G37970 NA non-coding downstream 343841 13063334 ~ 13064366 (+)
G37978 NA non-coding downstream 350678 13070171 ~ 13071870 (+)
G37980 NA non-coding downstream 352481 13071974 ~ 13072825 (+)
LOC120556864 NA non-coding downstream 355926 13075419 ~ 13079887 (+)
G37730 NA other upstream 328985 12386171 ~ 12387175 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other upstream 437536 12274760 ~ 12278624 (+)
G37714 NA other upstream 461186 12253066 ~ 12254974 (+)
G37597 NA other upstream 910766 11780178 ~ 11805394 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other upstream 1321762 11385184 ~ 11394398 (+)
b3galt6 b3galt6 other downstream 15033 12734526 ~ 12741048 (+)
tmem167b tmem167b other downstream 29715 12749208 ~ 12752285 (+)
kif21b kif21b other downstream 106023 12825516 ~ 12907935 (+)
spcs1 spcs1 other downstream 485976 13205469 ~ 13208258 (+)
vamp3 vamp3 other downstream 576883 13296376 ~ 13303615 (+)

Expression


Co-expression Network