vamp3 (vamp3)


Basic Information

Item Value
gene id vamp3
gene name vamp3
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13296376 ~ 13303615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51049
AGATTAAGTGACGTGCTAtgcaaaatcttttttttgtgtgtaatctCACAGAAGGCTGATATCTACACTTCATTTTAATCGTTTCACCAGGTCAGCAGCCAGTCCAGAAGGTTCTGGTGCAGCGTCAGGCAACAGGCGCTTGCAGCAGACCCAGGCCCAGGTGGATGAGgtggtggATATCATGCGTGTTAATGTGGACAAAGTGCTGGAACGTGACCAGAAGCTGTCTGAACTGGATGACAGAGCCGACGCACTGCAGGCTGGAGCCTCCCAGTTCGAGACCAGTGCCGCTAAGCTGAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATCCTGATAGCTGTCATagtgatcatcatcatcatcattgttaTTTGGAATTACTCCTAAAACGGCAACAAGAGGAGGAGTGAAGAAAACGATGACGAAGAGGAGAGGAGCAACATACATAATTAATATCTCAAAGGAAGATGTCATGTGATTACTGCCTACTGTGCTTCACAACGTTTTTCTCCTGGCAGGGATCTTCATTCCTTGGCCTggtttgctctgtgtgtgtgggtgtgtgtgtgggggtgtctgAGTAAAGGATTGTCACAATACCAGAGTTTTACCCTGCATTACTACACCATACCTGTTATCTTTACACTTATTAGAATTCCATTGCACTTGccaaagaaaacagaaacatacaTAAAGAAACTGGTTGACAATTTAACTCGATCTCAACCAAAACCTATTTAAAAGTTTAAATGAATCCTcttacaatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcgcacatgtacatacatacatcaacCTCAGGACATGAAGTGAAGAATGTTGTTGTAAACTCTCCTCAATTTATAttgacttttttatgttttattaataGCCATTGATTTTGTGTGCCAGGCTAAAAGACGTGCCTTTGAGGATATGCTGTTCTGTGTTAGTTAACATAGTATTAGTAACCCTGCATATAATTGAAGAGATGCCCCTTtccaacacataacacatttgTACTTTTCAGATGCcaaaatttagatttttctcATTTAAAGGTTATTTGCTAATTCATTTCTCTGTGCAAAACATTTGAATTGAGATTGAATTAAGAGGAATTTCATTGGTCACCCGGCAACAAATGAGCTAACCAGTAACACACTGTTGAACCACCTGATCATACCTGTCATTGTCCATCTTCCTTTCAGGTTGGACAGTAGAAACTAATATAGACTTGTGTTTAGATAAGTGCCTTTATGTTAAGACCTATAGCCTTACAGCTACGTAAGACTAGAGAAACTGCTAAGAAGCTTACTACACTTAGTGCTACACTGGGTTAAAAGTGGCAAATTGTTTCAAGCAGGTGTTTTCAATGACGTGCTAGAAAGTTTGCCTTTTTGTGATCTATTCAAGCACAAGAAAATGTAGTATTAGACAGGTGCCTTTAATAGGTTTCTCCAATGGAGAACAGCCAAAATACAGCCAAGCCTTATTGGTCATATATACCAGCCAGTAAAAGTAGTGCCTTCTGAATGCTCCAACTGTCCAAACAAATACTATGCTGCTTGCTTATTCAGCTGAACTCATTAGCCTTTAATACACTCTTCTGTTTAGTCATACTGTCATTTTTTCCCACTTTCCCCACACATATTTTAGTGTTATTGCGCCTCTAACAATAGCTTTTTGTAATCTATTATATGTAGATCTAACCTTAAGGAGACTGTGTAtagtattttttgttttggagATCACTGCTGCTCAGCATCATGCGTTCTTGAGTGTAGAGAAAAACTTTGTTGGGCAATGACAGTGTTGTACACCGACACTGGATGATTGCATTCTGTTGCCTCC
>XM_039796323.1
tctCACAGAAGGCTGATATCTACACTTCATTTTAATCGTTTCACCAGGTCAGCAGCCAGTCCAGAAGGTTCTGGTGCAGCGTCAGGCAACAGGCGCTTGCAGCAGACCCAGGCCCAGGTGGATGAGgtggtggATATCATGCGTGTTAATGTGGACAAAGTGCTGGAACGTGACCAGAAGCTGTCTGAACTGGATGACAGAGCCGACGCACTGCAGGCTGGAGCCTCCCAGTTCGAGACCAGTGCCGCTAAGCTGAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATCCTGATAGCTGTCATagtgatcatcatcatcatcattgttaTTTGGAATTACTCCTAAAACGGCAACAAGAGGAGGAGTGAAGAAAACGATGACGAAGAGGAGAGGAGCAACATACATAATTAATATCTCAAAGGAAGATGTCATGTGATTACTGCCTACTGTGCTTCACAACGTTTTTCTCCTGGCAGGGATCTTCATTCCTTGGCCTggtttgctctgtgtgtgtgggtgtgtgtgtgggggtgtctgAGTAAAGGATTGTCACAATACCAGAGTTTTACCCTGCATTACTACACCATACCTGTTATCTTTACACTTATTAGAATTCCATTGCACTTGccaaagaaaacagaaacatacaTAAAGAAACTGGTTGACAATTTAACTCGATCTCAACCAAAACCTATTTAAAAGTTTAAATGAATCCTcttacaatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcgcacatgtacatacatacatcaacCTCAGGACATGAAGTGAAGAATGTTGTTGTAAACTCTCCTCAATTTATAttgacttttttatgttttattaataGCCATTGATTTTGTGTGCCAGGCTAAAAGACGTGCCTTTGAGGATATGCTGTTCTGTGTTAGTTAACATAGTATTAGTAACCCTGCATATAATTGAAGAGATGCCCCTTtccaacacataacacatttgTACTTTTCAGATGCcaaaatttagatttttctcATTTAAAGGTTATTTGCTAATTCATTTCTCTGTGCAAAACATTTGAATTGAGATTGAATTAAGAGGAATTTCATTGGTCACCCGGCAACAAATGAGCTAACCAGTAACACACTGTTGAACCACCTGATCATACCTGTCATTGTCCATCTTCCTTTCAGGTTGGACAGTAGAAACTAATATAGACTTGTGTTTAGATAAGTGCCTTTATGTTAAGACCTATAGCCTTACAGCTACGTAAGACTAGAGAAACTGCTAAGAAGCTTACTACACTTAGTGCTACACTGGGTTAAAAGTGGCAAATTGTTTCAAGCAGGTGTTTTCAATGACGTGCTAGAAAGTTTGCCTTTTTGTGATCTATTCAAGCACAAGAAAATGTAGTATTAGACAGGTGCCTTTAATAGGTTTCTCCAATGGAGAACAGCCAAAATACAGCCAAGCCTTATTGGTCATATATACCAGCCAGTAAAAGTAGTGCCTTCTGAATGCTCCAACTGTCCAAACAAATACTATGCTGCTTGCTTATTCAGCTGAACTCATTAGCCTTTAATACACTCTTCTGTTTAGTCATACTGTCATTTTTTCCCACTTTCCCCACACATATTTTAGTGTTATTGCGCCTCTAACAATAGCTTTTTGTAATCTATTATATGTAGATCTAACCTTAAGGAGACTGTGTAtagtattttttgttttggagATCACTGCTGCTCAGCATCATGCGTTCTTGAGTGTAGAGAAAAACTTTGTTGGGCAATGACAGTGTTGTACACCGACACTGGATGATTGCATTCTGTTGCCTCCAACtctattaaaataaatgtattttaatgagATAAACAATTTGGGATTACTTTGTACATTAATTTCACTTTGTCTGGAATTTCATAGCTGAAATTACAACTGTTGATGTTGCATGTTTCAGTAGTTTTTAAGGAATTAGCTGTTATTGGTCCTTCACAATGCATGCAttggagtctctctctctctctctctctctctctctctctctctaaaaggGACCAGTCTTTTATCACAGATTTGTGGTGTTGTCATCCTCTACGTTGCCTGCCTACACCATCCATGGTCTACAACAGATATCTGTCACCCAGTAACTTCCAACCTTTGCTTCGGTCTATACTGGGAATGCATTTGCAATTCTATTATTTGGCCCTAAGTTCCTTTTTGCTTGAATACAACAGAGTTAACTTA

Function

symbol description
vamp3 Predicted to enable SNAP receptor activity and syntaxin-1 binding activity. Predicted to be involved in SNARE complex assembly. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in plasma membrane. Orthologous to human VAMP3 (vesicle associated membrane protein 3).

NR:

description
vesicle-associated membrane protein 3

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13505 VAMP3; vesicle-associated membrane protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU51049 False 1917 lncRNA 0.40 4 13296376 13303207
XM_039796323.1 True 2282 mRNA 0.40 4 13296419 13303615

Neighbor

gene id symbol gene type direction distance location
trnar-acg_15 NA coding upstream 10065 13286239 ~ 13286311 (+)
camk1b NA coding upstream 32036 13219343 ~ 13264340 (+)
gnl3 NA coding upstream 101475 13171393 ~ 13194901 (+)
LOC120558251 NA coding upstream 103056 13193247 ~ 13193320 (+)
LOC120558254 NA coding upstream 104465 13191778 ~ 13191911 (+)
psma5 psma5 coding downstream 38285 13341900 ~ 13347042 (+)
LOC120557160 sort1 coding downstream 49453 13353068 ~ 13364340 (+)
myog myog coding downstream 76505 13380120 ~ 13382642 (+)
tmem183a tmem183a,LOC102794008 coding downstream 142676 13446291 ~ 13456049 (+)
srgap2 srgap2 coding downstream 554146 13857761 ~ 13919015 (+)
G38001 NA non-coding upstream 179804 13115654 ~ 13116572 (+)
LOC120556864 NA non-coding upstream 216489 13075419 ~ 13079887 (+)
G37980 NA non-coding upstream 223551 13071974 ~ 13072825 (+)
G37978 NA non-coding upstream 224506 13070171 ~ 13071870 (+)
G37970 NA non-coding upstream 232010 13063334 ~ 13064366 (+)
LOC120556887 NA non-coding downstream 472166 13775781 ~ 13777150 (+)
G38156 NA non-coding downstream 607714 13911329 ~ 13989841 (+)
G38163 NA non-coding downstream 688294 13991909 ~ 13992179 (+)
G38164 NA non-coding downstream 699347 14002962 ~ 14003187 (+)
G38206 NA non-coding downstream 741742 14045357 ~ 14045559 (+)
spcs1 spcs1 other upstream 88118 13205469 ~ 13208258 (+)
kif21b kif21b other upstream 388441 12825516 ~ 12907935 (+)
tmem167b tmem167b other upstream 544091 12749208 ~ 12752285 (+)
b3galt6 b3galt6 other upstream 555328 12734526 ~ 12741048 (+)
cdab cda,LOC103354969,LOC106590862 other upstream 576883 12716160 ~ 12719493 (+)
per3 per3 other downstream 1800 13305415 ~ 13329332 (+)
mdm4 mdm4 other downstream 16069 13319684 ~ 13372372 (+)
tfeb tfeb other downstream 153314 13456929 ~ 13528319 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other downstream 923482 14227097 ~ 14233537 (+)
LOC120557952 mettl21b other downstream 1031545 14335160 ~ 14337760 (+)

Expression


Co-expression Network