G38276


Basic Information

Item Value
gene id G38276
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14305760 ~ 14308441 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51375
ATTtcaatttaaattttatttatagtatcaaatcataacaagagttatctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattccagcaatTAAGTATAAGCAGTATGCAAGTCATATGGCCATGTTAACATTTGAATATGCTGCCTTTTGTCCTTTAAAAGTTTAAGATTTCGTTGAACATTTTCTGTATCCTCATAATAAACACTAGCACCTTATGGTAAAAGTCTCCATTATTCCAGTGTAACCAAACCATTGAGAGCATATTATTCAGCTGCAACTAATAGTGATATTTCCACAAATATAAATAGGTCAGATAGTATATAACAAAGTTACTTGTAATGGGAGCAACATATTGTAATTCTTTCTGAGAACAATTCAATGCTGTATGAGCCTCACTGAAACTGAATATGCAATATTGTCGAAACACATGCGAGCAACTACACAATTTAAAATTAAGACaagataatacaataataagAATAATGCAAGCATGTTACATGTATATTCATACACTGAAAATCCAACATAAGACTGACCCCAGAAGGTTGAAGACACATAATGCACATCACTGAAACACAAtcttaacatcagcattttcGCCCAACATTTCTCCAGTCACAAAATAGAAATATTGGGTGGGAAATATCTGACTTCATTAGATTTCTGAAGGTATCTCTGTATTGTTTGACTGTTTTAAGAAGCATAAGCAATGGGAGAATCTTGTTACAAAGATGATGCAAATACATAAATTGTCAGCAAAGCTACAGGACAACAGCTAGAAAACTAACGCAACTCTTGTCCAGTGCACCTTAATGTATTAAATTCAATGGAATGCGTTTTTTTACACTGAACTTGGAAAATTTGGGAAATCTCTATCAAACCCCCTCTGCCCAGCACTTTCAGGACTCAGTTATAACTGTGGATCAAATCTTTATGTCGCCACATTTATATTCTGTCAAGTGTTTCTCAAATAATTCTCCTCCTATCTAagagacagtaaaaaaaacactgacattattacattatatatttttcttttagttgGATGAAAACTGACAGTGAAAGACACAAGAACAGACAGGTAGGATAGTGTTGTTGAACAAGGGTGAGCTGCTGTGAGCTTCTGAAGGCAAAAGCAAGTTTATCACTAGCTGCATTAGGAAGTACAGATGAAACTACTGTAAATTTGATTAAGCACAAAAAAGCTCTCACGACATACACAATAAGCAAATGTATTCTGTATCAGTCTACCGTAGAAGATGCTGTGCTCTTTTATTTACAGAAAACAAAAGGATGCATTGCATTTAAGTTGGCACACAATAGCAGTGATCAGACTGAGTAGTGCAATTTGCACTTTTGATTTGGCCTGTCAGTGTGGTCTCTGCCTGAGTGCAAACTGTCTGTACTTTGAAATTATTTAGAATTTTATCAGGAATTAGAGTGCAAAAGACATACACAATAATGCTTAATAATAgaaacacacagttacacactcaGCGATGGATGCTCTCTTTTAAATACTCATCCTGCGTCATTCAAGATAATATAGATGTTCTGTTGTGACTCAGCAGATTGGAGGATGTAGTGGACGCGTTAATTTACTTGAGGTTAAAGAAGCCAGTTGGTTTTGTTGGTGCAGCCATCAGCATTTTAGCTTGGTTCTTGTGAGTTATGTGGatAGTACATGGAGGCTGCATCCAGGGCTCCCCATCAATTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51375 True 1751 lncRNA 0.36 2 14305760 14308441

Neighbor

gene id symbol gene type direction distance location
nab2 nab2 coding upstream 28330 14266964 ~ 14277430 (+)
inpp1 inpp1 coding upstream 47475 14253007 ~ 14258285 (+)
LOC120557947 LOC104954762 coding upstream 57313 14242426 ~ 14248447 (+)
LOC120557951 LOC103359350,LOC103386010,LOC102306603,LOC101466691 coding upstream 79676 14221022 ~ 14226084 (+)
rh50 LOC107395613,LOC108235666,LOC106513294,LOC100692870,LOC103359386,LOC101474088,LOC102304555 coding upstream 96069 14206169 ~ 14209691 (+)
stx16 stx16,LOC102781320 coding downstream 16493 14324934 ~ 14333695 (+)
si:ch211-159e12.5 NA coding downstream 31207 14339648 ~ 14345605 (+)
ankrd52b ankrd52,LOC103359366 coding downstream 107995 14416436 ~ 14435022 (+)
npepl1 npepl1 coding downstream 127200 14435641 ~ 14443805 (+)
ctsz ctsz coding downstream 143753 14452194 ~ 14455976 (+)
G38274 NA non-coding upstream 11603 14293933 ~ 14294157 (+)
G38247 NA non-coding upstream 110343 14193103 ~ 14195417 (+)
G38206 NA non-coding upstream 260201 14045357 ~ 14045559 (+)
G38164 NA non-coding upstream 302573 14002962 ~ 14003187 (+)
G38163 NA non-coding upstream 313581 13991909 ~ 13992179 (+)
G38317 kdm5b,LOC108235655 non-coding downstream 156533 14464974 ~ 14466684 (+)
G38331 NA non-coding downstream 184462 14492903 ~ 14494740 (+)
G38441 cdk2 non-coding downstream 299398 14607839 ~ 14610422 (+)
G38449 NA non-coding downstream 334491 14642932 ~ 14690625 (+)
G38496 NA non-coding downstream 402285 14710726 ~ 14712134 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 72223 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 777441 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 933388 13319684 ~ 13372372 (+)
per3 per3 other upstream 976428 13305415 ~ 13329332 (+)
vamp3 vamp3 other upstream 1002145 13296376 ~ 13303615 (+)
LOC120557952 mettl21b other downstream 26719 14335160 ~ 14337760 (+)
cdk4 LOC107684003,LOC107701179 other downstream 432168 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 456856 14765297 ~ 14857069 (+)
G38517 NA other downstream 499911 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 556618 14865059 ~ 14874459 (+)

Expression


Co-expression Network