G38317 (kdm5b,LOC108235655)


Basic Information

Item Value
gene id G38317
gene name kdm5b,LOC108235655
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14464974 ~ 14466684 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51433
tgcaAACTGCAACATATGAATTATATTATTTACCCAAAGGAGCAGAAAAAGGTCATATACCTGTGGCAAATACATCACACAGTCTGTGTTAAATCTAAGTCCAACACAATATTTTCATCTAAAccataaagggaaaagccaccCTAAAATAAAATTTACATTCCTTTGATGTCGGACAGTTCATTCTTATTTTGTGAACATAATCAAGTCTCACCCAACGCCAAGACTCTCGTTTTTCCTCCACAGACAGCGCAAAAGGGAACCAGACTTTATATCAAAGTCAGTGATTTGATACGGGATATTGGCAAATATTATTCAGGATCAACAAGCTCAGACATACAGTTGCAGCTCTTTCGGGTTTCTGATTCAAGTTCTGTTCACAAATGTTAATTGAACTGTGTAATATCATAGGATTCATAAAGTGAATTCATCAGGGTTTTTGCTTTTAGAAGGCATTCTATCAAAGGATTTCTAAGCACGAACATAGCTCAGTGGAACACTGAACCTCAATCAGTTCAGTTATTGCTTAGATAAATAATATTTACTCTACAAGAGAAAGAAGTTTCACATTGttcagatgtaaaaaaaaaaaaaaagcagttctaaaatgtgttgtcaaattgactttttttttttggttgaaaAATCCCTGCGCTGTTGAAACATTTCACCATTTTGTACATCTGCATCAAGTCTTGGAAAGTTTCAGAAAGGATTAATTGATTGGCTGAAAAACCAGCCACGTGACGAAAACAGTGACAGAAGTCTTTTGTAACTCTGGAAAAAACAGTAAGTAGCACCATGTTCGCTAAGGGCAAGCCAGAAGGTAAAGGGGGAGAAGCCACATGAGCACCCAGAGTTCTGGTGTGCACTTAAGTGCTGCGGCTCGCAACAAAAACTGCAGGTCCTTCAAAGTCACTTTTTGGTCTTCATTCTCCTCCGTCGTAGTCTGGCTGTGTGCAGCTTATGCAAATATAGTCCTCCAACTCTGCTCGCTCAGCAGACAGTCCCACACAGACCTGGTGGAACCACTGATTGCAGCTACCGTCACATTGGACCCAGTTaacctCGTCGCCCTCTGGCTCTCTGCACCATGGTGCAGCACACAATGAGTAGTCCTCCTCGGAATCTGAAGCAGCGGGGTCAGACACCGGGTGTGTGGGAGAACAAGTCCGCTTAGTTTCTTCGCTCCTCACTTTGCTCTTCTTAGACTTCTTTTTGCGGCACTTCTTGGCCTTCTCGCTGTGCTGCGAGTCGGAGCTGTCCTTACGTCGCTTGGTCCTTTTGCTCGGACCGTTCCCCGTCTCCTTTTTGACACTGGACACTCCATTCCTGTTGTGGTGGGGGCTCCCTCTCTGAGACTGTTGGTCCTGTTCTGTGTTGTTCTCACAGGGGGCACTATGTGAGAGCAGGGGGGCCAGTTTGGACAGCAGGTATCTGTACAGCTGCTCGGTTTCAGGCAGAGTGACCTGCAGCAGGAATCCCTCCACCATCAGCTCCTCCAGCTCAGGACCGAGGCCTGGG

Function

symbol description
kdm5b Enables several functions, including histone demethylase activity (H3-K4 specific); transcription corepressor activity; and zinc ion binding activity. Involved in histone H3-K4 demethylation. Located in cytosol and nucleoplasm. Implicated in autosomal recessive non-syndromic intellectual disability; breast cancer; and high grade glioma. Biomarker of esophagus squamous cell carcinoma; high grade glioma; prostate cancer; urinary bladder cancer; and uveal melanoma.

NR:

description
PREDICTED: lysine-specific demethylase 5B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51433 True 1524 lncRNA 0.45 3 14464974 14466684

Neighbor

gene id symbol gene type direction distance location
ctsz ctsz coding upstream 8998 14452194 ~ 14455976 (+)
npepl1 npepl1 coding upstream 21169 14435641 ~ 14443805 (+)
ankrd52b ankrd52,LOC103359366 coding upstream 29952 14416436 ~ 14435022 (+)
si:ch211-159e12.5 NA coding upstream 119369 14339648 ~ 14345605 (+)
stx16 stx16,LOC102781320 coding upstream 131279 14324934 ~ 14333695 (+)
si:ch1073-456m8.1 LOC102799563 coding downstream 107449 14574133 ~ 14583735 (+)
olfml3b olfml3 coding downstream 132339 14599023 ~ 14602910 (+)
pmela pmel,LOC103359383,LOC103375503 coding downstream 152833 14619517 ~ 14626326 (+)
prph prph,LOC103375502 coding downstream 165194 14631878 ~ 14637440 (+)
timeless timeless coding downstream 171714 14638398 ~ 14650434 (+)
G38276 NA non-coding upstream 156533 14305760 ~ 14308441 (+)
G38274 NA non-coding upstream 170817 14293933 ~ 14294157 (+)
G38247 NA non-coding upstream 269557 14193103 ~ 14195417 (+)
G38206 NA non-coding upstream 419415 14045357 ~ 14045559 (+)
G38164 NA non-coding upstream 461787 14002962 ~ 14003187 (+)
G38331 NA non-coding downstream 26219 14492903 ~ 14494740 (+)
G38441 cdk2 non-coding downstream 141155 14607839 ~ 14610422 (+)
G38449 NA non-coding downstream 176248 14642932 ~ 14690625 (+)
G38496 NA non-coding downstream 244042 14710726 ~ 14712134 (+)
G38495 NA non-coding downstream 246100 14712784 ~ 14714517 (+)
LOC120557952 mettl21b other upstream 127214 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 231437 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 936655 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 1092602 13319684 ~ 13372372 (+)
per3 per3 other upstream 1135642 13305415 ~ 13329332 (+)
cdk4 LOC107684003,LOC107701179 other downstream 273925 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 298613 14765297 ~ 14857069 (+)
G38517 NA other downstream 341668 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 398375 14865059 ~ 14874459 (+)
G38834 NA other downstream 1178827 15645511 ~ 15647851 (+)

Expression


Co-expression Network