G38441 (cdk2)


Basic Information

Item Value
gene id G38441
gene name cdk2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14607839 ~ 14610422 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51611
atatCCATAAAAACAGTTCATAACGTTTGAATAAAATCTAGAGTAAGAAAGATGCAACAGTACATTAAATTCCGTAAAATCTGAATTACAACAGGGAACATTTATATTTCACAACTGCATGTACAAAGCTCTGAGAACTTCAGTCAGGAGGAGTAATCCTGCCAACAAATCTGAATGACCAATaaacatttttgtgtgttaaaCTAAAGGTGCCGTTATAAAACCACTTCAAGATACTTTAAACCCAAACATAGAATTTAAGTGCGAGAAAATAAACCTAAAAGAACTCAACCGTAGTCTCATGTTCTTTTAGCGCAAACTGTTGTTAGCTGACGTTGTTCGTTGTGCGACAACTGTCCCCTACCTCTTTCATTCAGCTGCTGCTCAGTCTTACAAAGCATGACATTTGTTATTTGCACTATCCCACACACTTATTCAATCATATTTAAATATGATTGAATAAGTGTGTAAATAATTGACTATTTGAATTTGGACTTCCTAAAGCCAACATACCATTTAAATTAGGAAATGGCAGTATTGGCAGATTGGGTCTACCTGACCTGCACTCAAGTCACAGGACCATCCCAATCACAAATAACATTAGCATCAAAAATGGCAGTTGCACACAAAATATGCAAAATGATATTGAAAATTACAGTTTAACCTCCTTAACTATTATAACATCATGGCTGAAAAAACAGCAAAACTCTCGGGATGTCTGTCATCTAGAAAGCTGGTTTTAGGTATTAACAAATATCCTTTGAAGGATCCAACATATCCTGTAGTGTCCACATTTTCTGTCCATTCCAGCCGTGGATATAAAGCGTGGAGGTCCTTATTGCTTAGACATTGTTGGCGTTAAAATTGACTGATATTTTGCTTGACTCAGAGTCTCAGATGAGGAACTGGCATGGTGACGTCACGGAAGTATCGATGTGCGAGGGCGTTTTTGGCAGATAACCTCTTGTTTGGATCATAATTCAGCATTTCCTGCAAAGATCCAAGCAGTTCTCTTCCATCCTCATCAAGAATCGGCACCACTTTAGATAATTCCTGCCGGGCCCACTTGGGGAAAGATGGTTTGTAGTCAGGCATTGATGTGACTCCAGGCCAGACAGTCTCATCAGGTGTGCCCAAGGTGCGGAAGATTCGGAATAACTGATCGATCTCAGAGTCGCCGGGGAACAAGGCCCTCTTGGTGAGCTGTACAACAGTGGACATTTCAGCAAAGATGCACCCCAGACTCCAGATGTCGACAGCTGTGGAGTAGTATTTACAGCCCAGGAGGATTTCTGGTGCTCTGTACCAAAGTGTTACCACCTAAAAAACATCACAGAAGCAAGTTTATATTCAGGAAAACACAATTTCTCAGGAAGAAATTAACATAGCCCTATTGTGAGATGTTTTCTGACTATACCACAGAGGGCTCAATTCACTTAGAGGAAACATGATGGAGTGCACTTTGCTGCTGGACTAGTAATGAATATGCACTTCAAACCATATGGTTACAGTTTTCAGAAGAAGCCTGTTGACATGAACAGAGTAGCTGTACACGTTAcctcatgtgtgtatgtgcggaCGGGCACCCCGAAGGCTCTTGCCAGGCCAAAGTCAGCGAGCTTGATCTCCCCCTGGGCGTTGATGAGGAGGTTCTGGGGCTTCAGGTCTCGATGAAGAACCCTGTGAGAGTGGCAGAAGGCCAGGC

Function

symbol description
cdk2 Predicted to enable cyclin binding activity and cyclin-dependent protein serine/threonine kinase activity. Predicted to be involved in several processes, including G1/S transition of mitotic cell cycle; protein phosphorylation; and regulation of G2/M transition of mitotic cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in nervous system and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in prostate cancer and renal cell carcinoma. Orthologous to human CDK2 (cyclin dependent kinase 2).

NR:

description
PREDICTED: cyclin-dependent kinase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51611 True 1705 lncRNA 0.42 3 14607839 14610422

Neighbor

gene id symbol gene type direction distance location
olfml3b olfml3 coding upstream 4929 14599023 ~ 14602910 (+)
si:ch1073-456m8.1 LOC102799563 coding upstream 24104 14574133 ~ 14583735 (+)
ctsz ctsz coding upstream 151863 14452194 ~ 14455976 (+)
npepl1 npepl1 coding upstream 164034 14435641 ~ 14443805 (+)
ankrd52b ankrd52,LOC103359366 coding upstream 172817 14416436 ~ 14435022 (+)
pmela pmel,LOC103359383,LOC103375503 coding downstream 9095 14619517 ~ 14626326 (+)
prph prph,LOC103375502 coding downstream 21456 14631878 ~ 14637440 (+)
timeless timeless coding downstream 27976 14638398 ~ 14650434 (+)
LOC120558200 LOC104954920,LOC103376555,LOC104932002,LOC101062422 coding downstream 42375 14652797 ~ 14668454 (+)
LOC120557243 agap2 coding downstream 147417 14757839 ~ 14777895 (+)
G38331 NA non-coding upstream 113099 14492903 ~ 14494740 (+)
G38317 kdm5b,LOC108235655 non-coding upstream 141155 14464974 ~ 14466684 (+)
G38276 NA non-coding upstream 299398 14305760 ~ 14308441 (+)
G38274 NA non-coding upstream 313682 14293933 ~ 14294157 (+)
G38247 NA non-coding upstream 412422 14193103 ~ 14195417 (+)
G38449 NA non-coding downstream 32510 14642932 ~ 14690625 (+)
G38496 NA non-coding downstream 100304 14710726 ~ 14712134 (+)
G38495 NA non-coding downstream 102362 14712784 ~ 14714517 (+)
G38526 NA non-coding downstream 252900 14863322 ~ 14864107 (+)
G38538 NA non-coding downstream 305256 14915678 ~ 14976904 (+)
LOC120557952 mettl21b other upstream 270079 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 374302 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 1079520 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 1235467 13319684 ~ 13372372 (+)
per3 per3 other upstream 1278507 13305415 ~ 13329332 (+)
cdk4 LOC107684003,LOC107701179 other downstream 130187 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 154875 14765297 ~ 14857069 (+)
G38517 NA other downstream 197930 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 254637 14865059 ~ 14874459 (+)
G38834 NA other downstream 1035089 15645511 ~ 15647851 (+)

Expression


Co-expression Network