G38449


Basic Information

Item Value
gene id G38449
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14642932 ~ 14690625 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51620
AACTGATCCAAAAGCACTAAACACATTCAGTTTTGCTGTTCTATTAATCCATTTCTAGTTCATATACGCGAGTCATCCAAGAGATGAATTACCTGCTTAAGTAGCACTCACTGGTGCTCTCTGGTCAAGTGTCTGAAGCATATTGTTCCTATTTGCTTTTCTGTTACTATGTTCGGATTTCTAACTGATCAAACATTCTAATAAGAAAAATATGGACAAAGCTCAATAGCATATAAATATTCTCCTAATAAAGATACAGTATGAAAGATTCAGGCCACATATAACAAGCCAAATTATATCTAAAGACCTTTTCTCACATGTCCATGAGTGCAGATTATTCAGAGTATTTCGTTATTTTTACATTAACTAGTCTACAGCTAGATAGATAACAAATGCAGGATGTGTTGTTTCTTACAGTACAGCCTTCTGTTAATATTTGAAACATCATATTTCCACAGTAGATTGGACACCAAAGTGAACTTCAGAACATTGTGTATACAAGTTTAATATTTTGAAAAAGCTTTACTACAGAATTTAAATACAatattctgaaaaataaaataaaaacaaggctCTACCATGAGAGTGTCTACATTACAACATGGAAACTGTCCAAACAACAGGTAACACCTGTTACTAGCTTTCTCCGGGATTTAGCTGTAGTCTCTTTAAAATTCTCATTTCAGGTTAACAAGgctgttgtctgtctgattcGTGGTAGCACTACTGCACTTCGTGGGACTGTTAACCGCTGTTGGACAGAAAAGCACTGACTGCATCCGTTTGCCTGCCAATATGTCCCGTTTGTTCACTCTTCTGCCGGATGGCTGACATTTACTGCGGTGTCATCTTGGCTGCTTCGGCTTTTATAAGTGAGATGAGTTCCAGGTTAATGAGAAACACAAAGCGAAGACCTGCAATCTGAAGAGACGGATACAGTACGTTAGGGCTATGTCTCACTTGGTACCACTCAAATATATCATGGTTGTTCAATTTAAATGCAAAACAACTCGGTTGACACCCTCCACACACCTCCACCACTGAGTTGTTGTTGAGTTTCCACTTGTTGCCCGACAGGACTGGTCTGCCATCAATGTAGATGGGTCGTCTGCCCTCATTGGCGATGAAGAAGTCTCCATTATTCTTCAGTTTAATAATTCCTTTGTTTCCTTGATATTTTCCAGGCAGGTCCCTCTAGCGAGAGATCTACATCTATTGGTTTGTCCTTGGTCGCC
>TU51621
agcttttttttttttttttttctTTTAATATTTTGAAAAAGCTTTACTACAGAATTTAAATACAatattctgaaaaataaaataaaaacaaggctCTACCATGAGAGTGTCTACATTACAACATGGAAACTGTCCAAACAACAGGTAACACCTGTTACTAGCTTTCTCCGGGATTTAGCTGTAGTCTCTTTAAAATTCTCATTTCAGGTTAACAAGgctgttgtctgtctgattcGTGGTAGCACTACTGCACTTCGTGGGACTGTTAACCGCTGTTGGACAGAAAAGCACTGACTGCATCCGTTTGCCTGCCAATATGTCCCGTTTGTTCACTCTTCTGCCGGATGGCTGACATTTACTGCGGTGTCATCTTGGCTGCTTCGGCTTTTATAAGTGAGATGAGTTCCAGGTTAATGAGAAACACAAAGCGAAGACCTGCAATCTGAAGAGACGGATACAGTACGTTAGGGCTATGTCTCACTTGGTACCACTCAAATATATCATGGTTGTTCAATTTAAATGCAAAACAACTCGGTTGACACCCTCCACACACCTCCACCACTGAGTTGTTGTTGAGTTTCCACTTGTTGCCCGACAGGACTGGTCTGCCATCAATGTAGATGGGTCGTCTGCCCTCATTGGCGATGAAGAAGTCTCCATTATTCTTCAGTTTAATAATTCCTTTGTTTCCTTGATATTTTCCAGGCAGGTCCCTCTAGCGAGAGATCTACATCTATTGGTTTGTCCTTGGTCGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51620 True 1235 lncRNA 0.39 2 14689000 14690625
TU51621 False 756 lncRNA 0.41 3 14642932 14690625

Neighbor

gene id symbol gene type direction distance location
prph prph,LOC103375502 coding upstream 5492 14631878 ~ 14637440 (+)
pmela pmel,LOC103359383,LOC103375503 coding upstream 16606 14619517 ~ 14626326 (+)
olfml3b olfml3 coding upstream 40022 14599023 ~ 14602910 (+)
si:ch1073-456m8.1 LOC102799563 coding upstream 59197 14574133 ~ 14583735 (+)
ctsz ctsz coding upstream 186956 14452194 ~ 14455976 (+)
LOC120557243 agap2 coding downstream 67214 14757839 ~ 14777895 (+)
smug1 smug1,LOC102792633 coding downstream 166836 14857461 ~ 14861776 (+)
LOC120556996 LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854 coding downstream 261697 14952322 ~ 14962342 (+)
faim2b LOC103376611,LOC101076527,LOC100707431,LOC101467547,LOC102195132 coding downstream 275082 14965707 ~ 14969461 (+)
LOC120556827 LOC103376578 coding downstream 328848 15019473 ~ 15118158 (+)
G38441 cdk2 non-coding upstream 32510 14607839 ~ 14610422 (+)
G38331 NA non-coding upstream 148192 14492903 ~ 14494740 (+)
G38317 kdm5b,LOC108235655 non-coding upstream 176248 14464974 ~ 14466684 (+)
G38276 NA non-coding upstream 334491 14305760 ~ 14308441 (+)
G38274 NA non-coding upstream 348775 14293933 ~ 14294157 (+)
G38496 NA non-coding downstream 20101 14710726 ~ 14712134 (+)
G38495 NA non-coding downstream 22159 14712784 ~ 14714517 (+)
G38526 NA non-coding downstream 172697 14863322 ~ 14864107 (+)
G38538 NA non-coding downstream 225053 14915678 ~ 14976904 (+)
G38670 NA non-coding downstream 559944 15250569 ~ 15250933 (+)
LOC120557952 mettl21b other upstream 305172 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 409395 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 1114613 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 1270560 13319684 ~ 13372372 (+)
per3 per3 other upstream 1313600 13305415 ~ 13329332 (+)
cdk4 LOC107684003,LOC107701179 other downstream 49984 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 74672 14765297 ~ 14857069 (+)
G38517 NA other downstream 117727 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 174434 14865059 ~ 14874459 (+)
G38834 NA other downstream 954886 15645511 ~ 15647851 (+)

Expression


Co-expression Network