G38495


Basic Information

Item Value
gene id G38495
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14712784 ~ 14714517 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51682
GTCCTTTTAATCCTTTTGTGAGAAAGGCCCCAAAACAAGGTAAAACAACATATAGTCTTTCAATTTTCATTCCACCTACTCTCTTCACCGTTTCCAGACAATATGCTAATCACCACTACAATGAACCAAACCCAATACAgatttttggttttactaaaaGAATGTACAGCTTTACAGGAAATTGTTACAGCACTTTGGAGTttggcaaaagaaaaaagaaaaaaagatatcaATTAATGAGTCTAGTCTGAATAGTGATGCATTTATGATTTACAGTACTTCCCTTGTGCTGTCTTTTGTGAgctaatgaataaaatatataaaaactcaAACACAAATCCACTATTGGGTAATAATGTAAATGTTTGTCAAAtaatgccagaaaaaaaaatcacaccatCACTTGTTATGcgctgggggggtggggggcagcCTCCTCATCCACAGAGCAGCATTATCGTACATGAAGAGATGACTGCATAAGACCATTATTTCAGTTCATTGCATGTCCAAAGTGTTTGGTCTCAGTTTGAATCCTCGATCCTCCGGAAAACTGCGAGGAAATTCTTCCCTCCACTTCTCTGgactttctttccttcctctgtACAGGTACCCAAACGATTTATGATGACATCACCAACCTGTTTCATCAGAGACGCGCGTAAACAGCGGATGTTCAGTGAAGTGCTTCACCATCCAGAGGTGCACTTCCTCCACATCTGTGATGGTATACACCAAACCCTGACATGTCCAGACAAACACAGCTGGGTTATTACCACAGTTCtgggaaaaaaatacattgacCAAGCTCCACTGGTGGATCAACACGCACCCATTTACTGATCACAAAATAAACTCATGGCCTTTatcgtaaaaaaaaatctttccttTTAAACATTGTCC

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
ko03020 RNA polymerase
ko03040 Spliceosome
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU51682 True 903 lncRNA 0.39 2 14712784 14714517

Neighbor

gene id symbol gene type direction distance location
LOC120558200 LOC104954920,LOC103376555,LOC104932002,LOC101062422 coding upstream 44330 14652797 ~ 14668454 (+)
timeless timeless coding upstream 62350 14638398 ~ 14650434 (+)
prph prph,LOC103375502 coding upstream 75344 14631878 ~ 14637440 (+)
pmela pmel,LOC103359383,LOC103375503 coding upstream 86458 14619517 ~ 14626326 (+)
olfml3b olfml3 coding upstream 109874 14599023 ~ 14602910 (+)
LOC120557243 agap2 coding downstream 43322 14757839 ~ 14777895 (+)
smug1 smug1,LOC102792633 coding downstream 142944 14857461 ~ 14861776 (+)
LOC120556996 LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854 coding downstream 237805 14952322 ~ 14962342 (+)
faim2b LOC103376611,LOC101076527,LOC100707431,LOC101467547,LOC102195132 coding downstream 251190 14965707 ~ 14969461 (+)
LOC120556827 LOC103376578 coding downstream 304956 15019473 ~ 15118158 (+)
G38496 NA non-coding upstream 650 14710726 ~ 14712134 (+)
G38449 NA non-coding upstream 22159 14642932 ~ 14690625 (+)
G38441 cdk2 non-coding upstream 102362 14607839 ~ 14610422 (+)
G38331 NA non-coding upstream 218044 14492903 ~ 14494740 (+)
G38317 kdm5b,LOC108235655 non-coding upstream 246100 14464974 ~ 14466684 (+)
G38526 NA non-coding downstream 148805 14863322 ~ 14864107 (+)
G38538 NA non-coding downstream 201161 14915678 ~ 14976904 (+)
G38670 NA non-coding downstream 536052 15250569 ~ 15250933 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding downstream 682212 15396729 ~ 15397507 (+)
G38762 NA non-coding downstream 747784 15462301 ~ 15463452 (+)
LOC120557952 mettl21b other upstream 375024 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 479247 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 1184465 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 1340412 13319684 ~ 13372372 (+)
per3 per3 other upstream 1383452 13305415 ~ 13329332 (+)
cdk4 LOC107684003,LOC107701179 other downstream 26092 14740609 ~ 14757359 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 50780 14765297 ~ 14857069 (+)
G38517 NA other downstream 93835 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 150542 14865059 ~ 14874459 (+)
G38834 NA other downstream 930994 15645511 ~ 15647851 (+)

Expression


Co-expression Network