cdk4 (LOC107684003,LOC107701179)


Basic Information

Item Value
gene id cdk4
gene name LOC107684003,LOC107701179
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14740609 ~ 14757359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51699
gtggaaataaaggcctaaaaagccccaaaaaataatctttaaagcgcccatattatgctcattttcaggttcataattgtattttaaggttgtaccagaataggtttacatggtttaattttcaaaaaacaccatatttttgttgtactgcacagctctctctcactgctgcagatcctcttttcacctggtttctgttttagttacagagtgagacctcttttcatcttcttcttctgtactatctttgattgcactcgcacatgctcagtagctcagatgtagatcatgtcagctagctagctctagagacagtaaaagaaagcctgtttctccaactttggtcagttacaaggcaggattagctgggagacttctaaatgaaggcacacatAAAATGCTGACCTTCGACCCACTGAAACGAATATCTGCCCTGAATGCCCTAGAACACCCATATTTCCAGGACGAGGAGACATTGACTTGAAATGATGCAGTGAAACGTGCAGCAAGAGGTCACAGCGTCTACGTTTTAGACCCGGCCCAACCATAAAGGATTTCAATTTCATTCAGTGCATTGCCTTTCAAGACGTCATGGTTATGCTTTGGGATATTATTTTTGTTACTCCTACATCGAAAAAGGATTAAAGCCTGAGAAatggaattaaaaaaagaagaggagtgAACTTGAAGATCGCTGGCATGCTTTCCAACGTCACAATTAATTACCATGTGGTGTCTTCAAGGACAGTACCAGTGTTTTTTGAGGTTTGATCAGTCTCGTCCACGCAGACACGTCTGTCATCTCCTCTGAAATGTTGCTTGTGTTACTTTTGTACAGTGTTTCGACAGAAGAAAGCAGAGATGTCGTCTTTTCTCGTTAAAGGCTGAACATATTCTGAAAGAAGTGACGCGTGAGGGTTAGAACAGCCAGTCGTTAGTGattttactgtatttgtgtTCATTATTATCATGCTTAAGGAACAATTACACCATAGGTTTTATGAAAAttatgagaaaatgaaagaatagTCGGAAGTAGCAGAAGGAAAATGAATAAGAAAGACACATGACAAAAATACTGGTATTGCCCTTAAATACTTATTGGAGGACTGAAGAGGTGTACTTCATTTCATGTCTAacattttttgtctgtttgctAAAACCATCTGAAATCAACCAGCACTGCAActacaaatgaataaaaaactGTTTTAATCAC
>XM_039796369.1
CAACAGGAAGCGACAACCCAAAAAAGAGTGCaggctggaagaaaaaaaacagtgaaggcCGAAATCACAATCTGTTGATTGCCTTGTGCACATCAGAGCCACTACCGGAGCTGTAAACCTCCGCCTGGACCCGACCTGTCGCTCCTGACCCGCTTCTGGAGGAGTTATACGTGGCAGATATAGTGAGCATGTCCTCCTCATAAAGCTAAAGTAAAGCTTACCTGCCGCAGAAAATACACAAACGTGTCTGTTTGATCTTGGCCATGGCCCACGGCACCAGCATCCAGTATGAGCCATTGGCAGAGATCGGAGGAGGCGCTTACGGGACGGTTTATAAGGCCCGCGATACAGAGAGCGGGCAGTTTGTGGCTCTGAAGAGCGTGCGCGTCCAGACAGACCAAAATGGCCTCCCAGTCTCCACAGTCAGAGAGGTGGCTCTGTTGAAAAGGCTGGAGCAGTTCGACCACCCTAATGTGGTCAGGCTTATGGATGTATGTGCCACCCAGAGGTCGGACCAGGAGACTAAAGTCACTCTGGTGTTTGAACATGTGGACCAAGACCTCAAGACGTACCTAGAGAGAGCTCCAGCTGCAGGATTATCCCCTGACCGCATTAAAgACCTGATGAGGCAGTTGCTGTGCGGTCTTGCATTCCTTCACTCTCACCGCGTGATGCACCGAGACCTGAAACCAGAGAATATTCTGGTAACCAGCCAGGGCCAGGTGAAGCTGGCTGACTTCGGACTGGCCAGGATCTACAGCTGCCACATGGCCCTCACTCCTGTGGTGGTGACACTGTGGTACCGACCCCCCGAGGTTCTGCTGCAGTCCAGTTACGCCACACCCGTGGACATCTGGAGCACCGGCTGCATCTTTGCTGAGATGTTCAGACGCAAGtacaaggcaggattagctgggagacttctaaatgaaggcacacatAAAATGCTGACCTTCGACCCACTGAAACGAATATCTGCCCTGAATGCCCTAGAACACCCATATTTCCAGGACGAGGAGACATTGACTTGAAATGATGCAGTGAAACGTGCAGCAAGAGGTCACAGCGTCTACGTTTTAGACCCGGCCCAACCATAAAGGATTTCAATTTCATTCAGTGCATTGCCTTTCAAGACGTCATGGTTATGCTTTGGGATATTATTTTTGTTACTCCTACATCGAAAAAGGATTAAAGCCTGAGAAatggaattaaaaaaagaagaggagtgAACTTGAAGATCGCTGGCATGCTTTCCAACGTCACAATTAATTACCATGTGGTGTCTTCAAGGACAGTACCAGTGTTTTTTGAGGTTTGATCAGTCTCGTCCACGCAGACACGTCTGTCATCTCCTCTGAAATGTTGCTTGTGTTACTTTTGTACAGTGTTTCGACAGAAGAAAGCAGAGATGTCGTCTTTTCTCGTTAAAGGCTGAACATATTCTGAAAGAAGTGACGCGTGAGGGTTAGAACAGCCAGTCGTTAGTGattttactgtatttgtgtTCATTATTATCATGCTTAAGGAACAATTACACCATAGGTTTTATGAAAAttatgagaaaatgaaagaatagTCGGAAGTAGCAGAAGGAAAATGAATAAGAAAGACACATGACAAAAATACTGGTATTGCCCTTAAATACTTATTGGAGGACTGAAGAGGTGTACTTCATTTCATGTCTAacattttttgtctgtttgctAAAACCATCTGAAATCAACCAGCACTGCAActacaaatgaataaaaaactGTTTTAATCACA

Function

NR:

description
PREDICTED: cyclin-dependent kinase 4-like isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51699 False 1219 lncRNA 0.39 2 14755283 14757358
XM_039796369.1 True 1767 mRNA 0.47 7 14740609 14757359

Neighbor

gene id symbol gene type direction distance location
LOC120558200 LOC104954920,LOC103376555,LOC104932002,LOC101062422 coding upstream 72155 14652797 ~ 14668454 (+)
timeless timeless coding upstream 90175 14638398 ~ 14650434 (+)
prph prph,LOC103375502 coding upstream 103169 14631878 ~ 14637440 (+)
pmela pmel,LOC103359383,LOC103375503 coding upstream 114283 14619517 ~ 14626326 (+)
olfml3b olfml3 coding upstream 137699 14599023 ~ 14602910 (+)
LOC120557243 agap2 coding downstream 480 14757839 ~ 14777895 (+)
smug1 smug1,LOC102792633 coding downstream 100102 14857461 ~ 14861776 (+)
LOC120556996 LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854 coding downstream 194963 14952322 ~ 14962342 (+)
faim2b LOC103376611,LOC101076527,LOC100707431,LOC101467547,LOC102195132 coding downstream 208348 14965707 ~ 14969461 (+)
LOC120556827 LOC103376578 coding downstream 262114 15019473 ~ 15118158 (+)
G38495 NA non-coding upstream 26092 14712784 ~ 14714517 (+)
G38496 NA non-coding upstream 28475 14710726 ~ 14712134 (+)
G38449 NA non-coding upstream 49984 14642932 ~ 14690625 (+)
G38441 cdk2 non-coding upstream 130187 14607839 ~ 14610422 (+)
G38331 NA non-coding upstream 245869 14492903 ~ 14494740 (+)
G38526 NA non-coding downstream 105963 14863322 ~ 14864107 (+)
G38538 NA non-coding downstream 158319 14915678 ~ 14976904 (+)
G38670 NA non-coding downstream 493210 15250569 ~ 15250933 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding downstream 639370 15396729 ~ 15397507 (+)
G38762 NA non-coding downstream 704942 15462301 ~ 15463452 (+)
LOC120557952 mettl21b other upstream 402849 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 507072 14227097 ~ 14233537 (+)
tfeb tfeb other upstream 1212290 13456929 ~ 13528319 (+)
mdm4 mdm4 other upstream 1368237 13319684 ~ 13372372 (+)
per3 per3 other upstream 1411277 13305415 ~ 13329332 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other downstream 7938 14765297 ~ 14857069 (+)
G38517 NA other downstream 50993 14808352 ~ 14816436 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 107700 14865059 ~ 14874459 (+)
G38834 NA other downstream 888152 15645511 ~ 15647851 (+)
crbn crbn,LOC102793823 other downstream 1165962 15923321 ~ 15937097 (+)

Expression


Co-expression Network