G38526


Basic Information

Item Value
gene id G38526
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14863322 ~ 14864107 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU51749
aaacgttcaagggggccgaatacttttgcaaggcactgtatcttcTCTCAGCAGCTATTGTCTGCCTACAACTAAAGGCAAGAACTTTGTAAGAATTAGTGGACATTCTAAAATAACATCTCTTCAGGGCTCTGAGATTAAGTCTGTAATTCAATACAATTAGCTGGTAATTGTAGTTGATGATTCCAGCAACTAGTGACAAAAAATGAATTTGAAATtgggtttttattttagaaacaAGTCTTTTCCTTCGAAGGCCTAAAGGAGACTTGTTGCTGCCATCTTTATTTCTGTGCTGGACTATGGTGATGTCGTATACATGTATGCATATTCGCAATGTCTACACTTGCTGCCTACTGTCTACCATGGAGCACTGATATTTATTACAAATTTTAAATCCCTTACCATTGTTCTTTGTATGCTTCGGTCGGATGGTCTGCCTCGTCCCCCCGTAGAATTAACCATTGGcatattcttatttatttaaggcTATCTTTGGTCTGCTTCCATCGTACATACATATCTACATCCTTCAAAAAAAGCATGGGAAATTATTGTATTCACTCCCAGGACTTATTTTAGGACCAGGACTTAATTGGGGAAAATGGTGTTTAAGtctgctgctccctctgctTGGAAGCATTTGCAAAATGACCTGAATTATCAGGAGATGGTGTCTCTGGATGGATTTAAAGGAATTCTAAATGACTTAGAGGCAGGcacatctggctgtagatgtttagATTGATTGATCCCTTGTGTTAATGACTTGTGAAGAATGTTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU51749 True 786 lncRNA 0.39 1 14863322 14864107

Neighbor

gene id symbol gene type direction distance location
smug1 smug1,LOC102792633 coding upstream 1546 14857461 ~ 14861776 (+)
LOC120557243 agap2 coding upstream 85427 14757839 ~ 14777895 (+)
LOC120558200 LOC104954920,LOC103376555,LOC104932002,LOC101062422 coding upstream 194868 14652797 ~ 14668454 (+)
timeless timeless coding upstream 212888 14638398 ~ 14650434 (+)
prph prph,LOC103375502 coding upstream 225882 14631878 ~ 14637440 (+)
LOC120556996 LOC104963001,LOC100707699,LOC101468050,LOC103376574,LOC102797035,LOC102310016,LOC102194854 coding downstream 88215 14952322 ~ 14962342 (+)
faim2b LOC103376611,LOC101076527,LOC100707431,LOC101467547,LOC102195132 coding downstream 101600 14965707 ~ 14969461 (+)
LOC120556827 LOC103376578 coding downstream 155366 15019473 ~ 15118158 (+)
LOC120556705 NA coding downstream 293601 15157708 ~ 15159398 (+)
si:dkey-28n18.9 LOC103376583,LOC102799394,LOC100705573,LOC104955032 coding downstream 295485 15159592 ~ 15165727 (+)
G38495 NA non-coding upstream 148805 14712784 ~ 14714517 (+)
G38496 NA non-coding upstream 151188 14710726 ~ 14712134 (+)
G38449 NA non-coding upstream 172697 14642932 ~ 14690625 (+)
G38441 cdk2 non-coding upstream 252900 14607839 ~ 14610422 (+)
G38331 NA non-coding upstream 368582 14492903 ~ 14494740 (+)
G38538 NA non-coding downstream 51571 14915678 ~ 14976904 (+)
G38670 NA non-coding downstream 386462 15250569 ~ 15250933 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding downstream 532622 15396729 ~ 15397507 (+)
G38762 NA non-coding downstream 598194 15462301 ~ 15463452 (+)
G38788 espl1 non-coding downstream 678146 15542253 ~ 15543372 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 6253 14765297 ~ 14857069 (+)
G38517 NA other upstream 46886 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 105963 14740609 ~ 14757359 (+)
LOC120557952 mettl21b other upstream 525562 14335160 ~ 14337760 (+)
LOC120557956 nrn1,LOC104931831,LOC102785075,LOC100692329,LOC102195708,LOC102307414 other upstream 629785 14227097 ~ 14233537 (+)
calcoco1b LOC104959845,LOC103376572 other downstream 952 14865059 ~ 14874459 (+)
G38834 NA other downstream 781404 15645511 ~ 15647851 (+)
crbn crbn,LOC102793823 other downstream 1059214 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 1101295 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 1185571 16049678 ~ 16060330 (+)

Expression


Co-expression Network