G38738 (scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919)


Basic Information

Item Value
gene id G38738
gene name scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15396729 ~ 15397507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52021
CTGCGGCCTGGGAATTGGTTTTTGTGGCTTCTTTGACCCTAGTTTCTTCATGGCATTGTAGTATTTCTTCTGTTCCTCCGTCATGAAGATATCTTGACCTCCAAActttttcttttgttggttGAAGTTATCAATGATGACACCAATGAAGAGGTTTAGAGTAAAGAACGAGCcgaagatgatgaagatgacaAAGTAGATGTACATGTATAAGTTGTCCTCGTAGATAGGCTGGTCCTC

Function

symbol description
scn8a Enables voltage-gated sodium channel activity. Predicted to be involved in several processes, including nervous system development; neuronal action potential; and sodium ion transmembrane transport. Predicted to act upstream of or within several processes, including adult walking behavior; muscle organ development; and sensory perception of sound. Located in cell junction and plasma membrane. Implicated in benign familial neonatal epilepsy and developmental and epileptic encephalopathy 13.

NR:

description
PREDICTED: sodium channel protein type 8 subunit alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52021 True 240 lncRNA 0.41 2 15396729 15397507

Neighbor

gene id symbol gene type direction distance location
si:dkey-195m11.8 LOC103376590 coding upstream 21117 15359663 ~ 15375612 (+)
slc4a8 LOC104954932 coding upstream 47466 15318249 ~ 15349263 (+)
LOC120557984 bhlhe40,LOC103376587,LOC101063749 coding upstream 90127 15302830 ~ 15306602 (+)
LOC120557980 LOC103376586 coding upstream 98245 15214633 ~ 15298484 (+)
LOC120557981 LOC103376584,LOC104955004,LOC108235576 coding upstream 188710 15197507 ~ 15208019 (+)
LOC120556644 NA coding downstream 55686 15453193 ~ 15455490 (+)
LOC120556642 mettl7a,LOC102782606,LOC101484749,LOC103385978,LOC103147640 coding downstream 58100 15455607 ~ 15456964 (+)
LOC120556683 LOC102785850,LOC100702077,LOC102299981,LOC103376602,LOC102207065,LOC102237428 coding downstream 209175 15606682 ~ 15626045 (+)
smarcc2 smarcc2,LOC102786132 coding downstream 233845 15631352 ~ 15643555 (+)
endou endou,LOC102787429 coding downstream 260024 15657531 ~ 15661996 (+)
G38670 NA non-coding upstream 145796 15250569 ~ 15250933 (+)
G38538 NA non-coding upstream 419825 14915678 ~ 14976904 (+)
G38526 NA non-coding upstream 532622 14863322 ~ 14864107 (+)
G38495 NA non-coding upstream 682212 14712784 ~ 14714517 (+)
G38496 NA non-coding upstream 684595 14710726 ~ 14712134 (+)
G38762 NA non-coding downstream 64794 15462301 ~ 15463452 (+)
G38788 espl1 non-coding downstream 144746 15542253 ~ 15543372 (+)
G38829 NA non-coding downstream 228804 15626311 ~ 15626840 (+)
G38832 NA non-coding downstream 246554 15644061 ~ 15644399 (+)
G38852 NA non-coding downstream 276472 15673979 ~ 15755059 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 522270 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 539660 14765297 ~ 14857069 (+)
G38517 NA other upstream 580293 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 639370 14740609 ~ 14757359 (+)
LOC120557952 mettl21b other upstream 1058969 14335160 ~ 14337760 (+)
G38834 NA other downstream 248004 15645511 ~ 15647851 (+)
crbn crbn,LOC102793823 other downstream 525814 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 567895 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 652171 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 751618 16149125 ~ 16158362 (+)

Expression


Co-expression Network