G38788 (espl1)


Basic Information

Item Value
gene id G38788
gene name espl1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15542253 ~ 15543372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52079
TCCACAACGCAGACACTgactcatttatttaaaaaatgatgtttaataaacacatcAAACAGTTAATAAAAATTTGCAAGATATTTAAAAGCATTCACACTGTAGTagcatttgtttaaataaagaaaatgcagtCCGTTAATCTTGCCAACAAACTGCATTACATTTCAAGTTAAAAATCATATACTCCAGCTTGTgtgctgaaaacatttagatACTGTATAGATTGTTTACATCCTGTTTTTAGAAGAATTTGAGTTTACCATCCCATCTACTGCAGGTGAATTGGTAAGCCATAGACTACAGGTGCAGCTCCTATGAGGTGTTTCAGGTGCGTGGCCTGACGGGAAGGGCCCATGTAATGCAGGAGGGGCGCTCCAGACCCAGCGGATAACCAGGACTCCAACAAGGCTTTAGTGAAGCGATCAATATCCCGATCTGTAACATCCCACAGATTTCCCAAAACAAATGGGCTgaggagaaaataaagaaatagaaACGTATTAAGAGGACAGTATTTACTTGCAGTTGAAAAAGGATCAGTAAAGACATATCTCACCAGCCTGCTATGAGGTAGTTGAGGATGATGCCTTGTCCTTCCTGATCCCCGCGCACTGCCAGAGCCGCACTACTGCAACCGAAAAGTAGAGAAGCTGCTCTCATCTGCCGTTTTAGGACTACCTGGCTGTCGAGGAATCGTGCGCCTGCACCGTGACCCACGTAACTAAAGCATCCCGGTAAGGGGGACATGTATAGATCCTTGATAGCAACAGCTTCTTCCAGCTGACCCGAGTCAGG

Function

symbol description
espl1 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in meiotic chromosome separation. Predicted to act upstream of or within chromosome segregation and proteolysis. Predicted to be active in cytoplasm; microtubule cytoskeleton; and nucleus. Orthologous to human ESPL1 (extra spindle pole bodies like 1, separase).

NR:

description
PREDICTED: separin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52079 True 798 lncRNA 0.43 2 15542253 15543372

Neighbor

gene id symbol gene type direction distance location
LOC120556642 mettl7a,LOC102782606,LOC101484749,LOC103385978,LOC103147640 coding upstream 85289 15455607 ~ 15456964 (+)
LOC120556644 NA coding upstream 86763 15453193 ~ 15455490 (+)
si:dkey-195m11.8 LOC103376590 coding upstream 166641 15359663 ~ 15375612 (+)
slc4a8 LOC104954932 coding upstream 192990 15318249 ~ 15349263 (+)
LOC120557984 bhlhe40,LOC103376587,LOC101063749 coding upstream 235651 15302830 ~ 15306602 (+)
LOC120556683 LOC102785850,LOC100702077,LOC102299981,LOC103376602,LOC102207065,LOC102237428 coding downstream 63310 15606682 ~ 15626045 (+)
smarcc2 smarcc2,LOC102786132 coding downstream 87980 15631352 ~ 15643555 (+)
endou endou,LOC102787429 coding downstream 114159 15657531 ~ 15661996 (+)
LOC120557865 LOC103376609,LOC103465378 coding downstream 133495 15676867 ~ 15709140 (+)
LOC120556700 NA coding downstream 166844 15710216 ~ 15710890 (+)
G38762 NA non-coding upstream 78801 15462301 ~ 15463452 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding upstream 144746 15396729 ~ 15397507 (+)
G38670 NA non-coding upstream 291320 15250569 ~ 15250933 (+)
G38538 NA non-coding upstream 565349 14915678 ~ 14976904 (+)
G38526 NA non-coding upstream 678146 14863322 ~ 14864107 (+)
G38829 NA non-coding downstream 82939 15626311 ~ 15626840 (+)
G38832 NA non-coding downstream 100689 15644061 ~ 15644399 (+)
G38852 NA non-coding downstream 130607 15673979 ~ 15755059 (+)
G38858 NA non-coding downstream 175624 15718996 ~ 15722184 (+)
G38860 NA non-coding downstream 184607 15727979 ~ 15729400 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 667794 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 685184 14765297 ~ 14857069 (+)
G38517 NA other upstream 725817 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 784894 14740609 ~ 14757359 (+)
LOC120557952 mettl21b other upstream 1204493 14335160 ~ 14337760 (+)
G38834 NA other downstream 102139 15645511 ~ 15647851 (+)
crbn crbn,LOC102793823 other downstream 379949 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 422030 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 506306 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 605753 16149125 ~ 16158362 (+)

Expression


Co-expression Network