G38852


Basic Information

Item Value
gene id G38852
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15673979 ~ 15755059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52158
gaaaagaaaaataaaaaaaaaaaaaaaaaaaaaggtacatcACCATCTATCAAAACTGGATCCCATCAAAAGGGACAATGCATAACTTCCTTCAACTGCACAAGTACAGCTGAGACGTTGCGGTTTCATCGTGCAACATATAACTGGTGCCTAgtacagacacatagacacacggACACGTTTTCTGCATGTGCAAACAGATGAGTTGACATTATCTGCCAGGTTTAATAGCAGTAATTGAAACACTGGGGCTCTATTTCAAATTTGCGGCTGCACTTCAGAGTCCCCCTCCCTGCTGGTTTTCACAGGAGTTCACCGTTACAAAAGGTGCACTGAATGTACTGAATGAGCTCATATGTCCACGTCATCTGAGTCAGAGGCGCTGGATGACTGCGACTCCTCCTGAGACTCTCCCCACACAAACCTATAGTTGTTCTCCAAGTCCTGCTGCCTCTTTTGCTCTTTGTAAACCTCTTCTGTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52158 True 482 lncRNA 0.44 2 15673979 15755059

Neighbor

gene id symbol gene type direction distance location
endou endou,LOC102787429 coding upstream 11983 15657531 ~ 15661996 (+)
smarcc2 smarcc2,LOC102786132 coding upstream 30424 15631352 ~ 15643555 (+)
LOC120556683 LOC102785850,LOC100702077,LOC102299981,LOC103376602,LOC102207065,LOC102237428 coding upstream 47934 15606682 ~ 15626045 (+)
LOC120556642 mettl7a,LOC102782606,LOC101484749,LOC103385978,LOC103147640 coding upstream 217015 15455607 ~ 15456964 (+)
LOC120556644 NA coding upstream 218489 15453193 ~ 15455490 (+)
b4galnt1b b4galnt1,LOC104942127 coding downstream 17130 15772189 ~ 15789905 (+)
ankrd33ab LOC103367911 coding downstream 63564 15818623 ~ 15823565 (+)
LOC120556934 LOC104941416,LOC101064200 coding downstream 69324 15824383 ~ 15833934 (+)
LOC120557571 ikzf4 coding downstream 96938 15851997 ~ 15859771 (+)
arf3b arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding downstream 116659 15871718 ~ 15876860 (+)
G38832 NA non-coding upstream 29580 15644061 ~ 15644399 (+)
G38829 NA non-coding upstream 47139 15626311 ~ 15626840 (+)
G38788 espl1 non-coding upstream 130607 15542253 ~ 15543372 (+)
G38762 NA non-coding upstream 210527 15462301 ~ 15463452 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding upstream 276472 15396729 ~ 15397507 (+)
G38885 LOC104942130 non-coding downstream 5733 15760792 ~ 15762315 (+)
G38948 NA non-coding downstream 159480 15914539 ~ 15914901 (+)
LOC120557201 NA non-coding downstream 164326 15919385 ~ 15921622 (+)
G38966 NA non-coding downstream 229565 15984624 ~ 15985096 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 440320 16195379 ~ 16195784 (+)
G38834 NA other upstream 26128 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 799520 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 816910 14765297 ~ 14857069 (+)
G38517 NA other upstream 857543 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 916620 14740609 ~ 14757359 (+)
crbn crbn,LOC102793823 other downstream 168262 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 210343 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 294619 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 394066 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 678179 16433238 ~ 16435229 (+)

Expression


Co-expression Network