G38858


Basic Information

Item Value
gene id G38858
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15718996 ~ 15722184 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52172
ccgggatccattagcccctgcgctaagctattcagctgataacgctaactctcccaatgttcgacccaggtgaaaaaagcttctgggggggttgtttggcccGAGgtcaaaggaccctagggtgaaattactccgaaccatcactttaataactACTTTTTGGTTCTGAGCAGTTGCCAGGCGACCACATTCAGATGGATTCTCACAATATCACCAGATCACGAGAGAGAATCGCTGAATCACGTAtcacacaaaaatccatcttgtcaggcttcaagtaatgcatTTGTGTCCAAACAGCAGTGGACCGAACCAATCAGCATccggtgaggagctactggcagctaagGTTGTGGTTTAGATGTGTGTGACGGCGGCGACTGTTGGTTCTACAGactaaaagagaaaaacatattTCCTCAAACTTTTCTATACGTGTCTTTTAAAACcctgaaaaatatatttaatggaTTGAAATGTAACCACTGTAAGATCAAATGCTATCGCTACCACAATTACTCCTAGtgataatactaataataatatagccATATTATCTTTGATTTCATGATTGATCATTACAGGTGGTATTGTTTCCTATGGCTATGTGCTGTTTTCATTTTACAGTGTCTTTCAATTGATGTTAATAGATAGACCATGCAAAGTGTTAAAGTATTCAAGCATCAGAAGGGAGAAttaaaatgcaatacaaatttaaattaacatgtcagtaacatttttttctcaaaccaATCTTCGCACCTGTTAGATCATATGTTCAGTAGAGCAGACTACTGTATACATGCATGCAGTAGAAGCATCCCACAGCCCCACGGGATGTTAGTTAGGAGTTAAACAATTTCATAGCTGTCGCCTGACATCTATCTAGACAGCATCTTCCCCACTGACTTCCTACCCCACAAGGCCAAAATAGAGAGGGGAACACAGAGCTCTGTGACAAAGGGAGAGCAATTTGTTGGATGAGGTTTTCAGCTGGATGGGACAGCAAGGAGAGCCATGACTCACCAGCTGCCTCTCCAGACAGGCCATTCATTGGCTCCAGGCCTTCACCCTGTGCCATGTCAGAGGACATGGGTGACCTAGCCTCCAGTGTGTTCCTACATGACCAATGACAAACAGTCATTACAACCAGTTGCTCATGTCATGACATAAAAAAGGGCGTGGGTACACTACTTCTTAGATGAAGCAAGTGCACTTTTAGTTTGTAGTTGTTGTTTCTGTAGAAATACATTTGCAATACAAAGGACGATTTTGTATTAATTCAAACAAGCAAGACACTGTAAACCAGCCTGGAGAAAATTAATAATATACTTACTCCTTGGAAACAAACACTAGTTTGGTTTTGATGTACTTTATGTAAGGACTGTCACTCCACTCCTCTCAGAGTAGTATTTTCCGAAAGCCTCGTCTTTAGGGGTGTTGGGATATAGGTAGAGCAGAGGATTTTCTGGGATATTTTCAGCTTCTAAGATCTGGAAATTCCTGATGATTTCATGAAACGGGATCTGGCAGAGGTCAACTTTGGTGAAGGGTTGGACTGTCTTTACATCAGGCTCACCTACAAATAGACAGTGGTAAAAGTAAGTTTAACTTATCCAACAGGACGCTTGTTTGTCTACATTGTAACaatatcaaaagaaaaaaaattaagagtcattatgaaataaaaatatctcACCAGTTATGGTGGTGTCTACCCAGGAGAAGGTGATTCCTCCAATGACACTTTCACTGAAGCGCAACAAGAACGTGCCTCTTTGTTTCTTCTTCAGGAGGGACTTCTCTTTGCCTTTGCTCACAAAACCCATGATGAGGCTACAGTACAGATAAAACGTCTTACATAAAACAAGAAACTTCTCCCAATTCCCAGGAATTAAATGCATGGGGTAAACTGCTATGTATTAAACCAAGATTAGACTAAAACACACCCTTCCCTCCACAGGTCTTCAAGGTACGTCTTCACCATCACCAAGATGCCATCAAACCACACCCAGAAAGTGTCAGGAGTATTTTCCTGTAACAAAAGGTGTGGCATAGGTCATCAATTCACACCTACAGTACATTCACTAACCATGTTTGATACCAGGAAGCTGACATGCacattagcactaaacacaaaataaattatgGGAATTCAGTCGTTAGTTTTGcagatatttggtcataaatctAAATATTGAACAAACTAACATAATATGATGGTGGCTCTAGAGGAAGAAATCAAGATATCACTAAAACAGCGACAATTCAGCTCGAGGGGTGACAggaatgtttgtaccaaaagtAATGGCAATCCTTCCAGTTGTTGtcgacatttcactcaaaacccgAAATTCATGGTGACACCAGATGGAAAAGTCACGGGATCACCAAAGTTGAGATATTCTGAGTCGAATTGTTAGGGTTTCTAGGATTCAGTATTCTTACCTTGCTAAATTTTGACCAAGGTACTTTATGGGTGTCatagttctgctgctttcctgGTGGGATAGAAAAAAAGATGCATTATACAACTCTCATTCACTGACATCATCTATAATAAATCATGCATTTTTGCTGTattgaggttgtttttttattttatctttaaatGTAAAACCAATCAATTAAAGATGCATTTTAGTAACTTGTGTCAAAATTGGATCAAGGTGTTTCCTGACATTATGTTTGACTGACAGATGAATGAATGTGGCTCTTTTTATAGACAGAACTGCAAAAATAGGCAAAGACAAGCAACTGAAGCAGACCATAGAAGCAACATTTACCAAAGAGTCTGTGTGCAATCATTTCCAGCTGAGCCTCATTCAGACCACGTTTAGTGGCAGCGAGAAACTGCCAGCTCAACATCTCTCCAAACTGCAGCCAAGGGGCTGCAGCAGAGTTGGCGAAGAACAACACATCCTGGAAAACAGACCCATattaacaaatatatacacaactGATTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52172 True 2969 lncRNA 0.40 2 15718996 15722184

Neighbor

gene id symbol gene type direction distance location
LOC120556777 gpr84,LOC108235641 coding upstream 3501 15713249 ~ 15715495 (+)
LOC120556700 NA coding upstream 8106 15710216 ~ 15710890 (+)
LOC120557865 LOC103376609,LOC103465378 coding upstream 9856 15676867 ~ 15709140 (+)
endou endou,LOC102787429 coding upstream 57000 15657531 ~ 15661996 (+)
smarcc2 smarcc2,LOC102786132 coding upstream 75441 15631352 ~ 15643555 (+)
tac3b NA coding downstream 14361 15736545 ~ 15741669 (+)
b4galnt1b b4galnt1,LOC104942127 coding downstream 50005 15772189 ~ 15789905 (+)
ankrd33ab LOC103367911 coding downstream 96439 15818623 ~ 15823565 (+)
LOC120556934 LOC104941416,LOC101064200 coding downstream 102199 15824383 ~ 15833934 (+)
LOC120557571 ikzf4 coding downstream 129813 15851997 ~ 15859771 (+)
G38832 NA non-coding upstream 74597 15644061 ~ 15644399 (+)
G38829 NA non-coding upstream 92156 15626311 ~ 15626840 (+)
G38788 espl1 non-coding upstream 175624 15542253 ~ 15543372 (+)
G38762 NA non-coding upstream 255544 15462301 ~ 15463452 (+)
G38738 scn8a,LOC106518053,LOC106572732,LOC103465359,LOC108440919 non-coding upstream 321489 15396729 ~ 15397507 (+)
G38860 NA non-coding downstream 5795 15727979 ~ 15729400 (+)
G38885 LOC104942130 non-coding downstream 38608 15760792 ~ 15762315 (+)
G38948 NA non-coding downstream 192355 15914539 ~ 15914901 (+)
LOC120557201 NA non-coding downstream 197201 15919385 ~ 15921622 (+)
G38966 NA non-coding downstream 262440 15984624 ~ 15985096 (+)
G38834 NA other upstream 71145 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 844537 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 861927 14765297 ~ 14857069 (+)
G38517 NA other upstream 902560 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 961637 14740609 ~ 14757359 (+)
crbn crbn,LOC102793823 other downstream 201137 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 243218 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 327494 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 426941 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 711054 16433238 ~ 16435229 (+)

Expression


Co-expression Network