G38948


Basic Information

Item Value
gene id G38948
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15914539 ~ 15914901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52290
CTACATCGCCCTCTCCTGAGCATCAGGATGGTTTTGTGCATTAGTCATGTCTAGGTTAGAGAAGTTTATTCTATGATCAATTTGAAAGATTTctgacaaatgaaaaaaaaattatttcaaacTCAGTTTAATAACTACTGGAGCTTTTGACCATATCACACAGTCCTCGTCAGCTAATTAAGGTTTCTCAATTGTCTTTCCATGAATCTAAGTGTATCAATGACTGCATTTGCTAATGAGGACTGTGTAATTAAAAGCTGTGGATACATTACTAAGTGGACCTTGAGATGGTAGTTGCAAGAAGATATCATTCCAATGGATTTCTATGTTAttatttggaaataaaataaaattctacCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52290 True 363 lncRNA 0.34 1 15914539 15914901

Neighbor

gene id symbol gene type direction distance location
pa2g4a pa2g4,LOC104933448,LOC102793326 coding upstream 920 15903500 ~ 15913619 (+)
erbb3a erbb3 coding upstream 14638 15879790 ~ 15899901 (+)
arf3b arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding upstream 37679 15871718 ~ 15876860 (+)
LOC120557571 ikzf4 coding upstream 54768 15851997 ~ 15859771 (+)
LOC120556934 LOC104941416,LOC101064200 coding upstream 80605 15824383 ~ 15833934 (+)
vhl vhl,LOC104941408 coding downstream 27863 15942764 ~ 15945552 (+)
tatdn2 NA coding downstream 33548 15948449 ~ 15960280 (+)
LOC120558102 LOC104943766 coding downstream 76833 15991734 ~ 16011506 (+)
prkcda prkcd,LOC104933455 coding downstream 102078 16016979 ~ 16034962 (+)
rft1 rft1 coding downstream 121073 16035974 ~ 16039274 (+)
G38885 LOC104942130 non-coding upstream 152224 15760792 ~ 15762315 (+)
G38852 NA non-coding upstream 159480 15673979 ~ 15755059 (+)
G38860 NA non-coding upstream 185139 15727979 ~ 15729400 (+)
G38858 NA non-coding upstream 192355 15718996 ~ 15722184 (+)
G38832 NA non-coding upstream 270140 15644061 ~ 15644399 (+)
LOC120557201 NA non-coding downstream 4484 15919385 ~ 15921622 (+)
G38966 NA non-coding downstream 69723 15984624 ~ 15985096 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 280478 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 320113 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 588537 16503438 ~ 16510185 (+)
G38834 NA other upstream 266688 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 1040080 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 1057470 14765297 ~ 14857069 (+)
G38517 NA other upstream 1098103 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 1157180 14740609 ~ 14757359 (+)
crbn crbn,LOC102793823 other downstream 8420 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 50501 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 134777 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 234224 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 518337 16433238 ~ 16435229 (+)

Expression


Co-expression Network