LOC120557201


Basic Information

Item Value
gene id LOC120557201
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15919385 ~ 15921622 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52300
CTTCGTCACATCCTCTTTCCGTTGCTCTTCTCGCTTTGAGAACCTTCTCCACACGATGAGAGCCAAGTGGAGGAAGAAGCGTATGCGCAGGCTGAAGCGTAAAAGGCGAAAGATGAGGCAGAGGTCAAAGTAAGCCCTCATCCCTGCCAGCTGAGATCCTGTCTGAGCCTCTCCAGATGACTGACGCACGTGGCTGAAGTGGAGCCTCCATCAGCGGAACAAAGCCCAAGTCCTGATTTCAGATGATGTGCATCTCATGGAGCCTGCTGTGAACGTCTGACTGGAAGAGGAAAAGACACTGGACAATCTCTCAACATCTGAACTACAGCGGCCTTGTTCACGGACCATAATActttgttttaacaactgtCATGTGGTGGTGTATTGAACAATAAATGGAACACTTGTTTAAAATTTACCAGAA
>XR_005638940.1
GCGCTTGAACGTGACGTCAACGCCTGTATAAAAAGCGCCCTCTTTCTTCGTCACATCCTCTTTCCGTTGCTCTTCTCGCTTTGAGAACCTTCTCCACACGATGAGAGCCAAGTGGAGGAAGAAGCGTATGCGCAGGCTGAAGCGTAAAAGGCGAAAGATGAGGCAGAGGTCAAAGTAAGCCCTCATCCCTGCCAGCTGAGATCCTGTCTGAGCCTCTCCAGATGACTGACGCACGTGGCTGAAGTGGAGCCTCCATCAGCGGAACAAAGCCCAAGTCCTGATTTCAGATGATGTGCATCTCATGGAGCCTGCTGTGAACGTCTGACTGGAAGAGGAAAAGACACTGGACAATCTCTCAACATCTGAACTACAGCGGCCTTGTTCACGGACCATAATActttgttttaacaactgtCATGTGGTGGTGTATTGAACAATAAATGGAACACTTGTTTAAAATTTA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU52300 False 424 lncRNA 0.48 4 15919430 15921622
XR_005638940.1 True 463 lncRNA 0.48 4 15919385 15921616

Neighbor

gene id symbol gene type direction distance location
pa2g4a pa2g4,LOC104933448,LOC102793326 coding upstream 5766 15903500 ~ 15913619 (+)
erbb3a erbb3 coding upstream 19484 15879790 ~ 15899901 (+)
arf3b arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding upstream 42525 15871718 ~ 15876860 (+)
LOC120557571 ikzf4 coding upstream 59614 15851997 ~ 15859771 (+)
LOC120556934 LOC104941416,LOC101064200 coding upstream 85451 15824383 ~ 15833934 (+)
vhl vhl,LOC104941408 coding downstream 21142 15942764 ~ 15945552 (+)
tatdn2 NA coding downstream 26827 15948449 ~ 15960280 (+)
LOC120558102 LOC104943766 coding downstream 70112 15991734 ~ 16011506 (+)
prkcda prkcd,LOC104933455 coding downstream 95357 16016979 ~ 16034962 (+)
rft1 rft1 coding downstream 114352 16035974 ~ 16039274 (+)
G38948 NA non-coding upstream 4484 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 157070 15760792 ~ 15762315 (+)
G38852 NA non-coding upstream 164326 15673979 ~ 15755059 (+)
G38860 NA non-coding upstream 189985 15727979 ~ 15729400 (+)
G38858 NA non-coding upstream 197201 15718996 ~ 15722184 (+)
G38966 NA non-coding downstream 63002 15984624 ~ 15985096 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 273757 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 313392 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 581816 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 631062 16552684 ~ 16556205 (+)
G38834 NA other upstream 271534 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 1044926 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 1062316 14765297 ~ 14857069 (+)
G38517 NA other upstream 1102949 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 1162026 14740609 ~ 14757359 (+)
crbn crbn,LOC102793823 other downstream 1699 15923321 ~ 15937097 (+)
ccdc174 ccdc174 other downstream 43780 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 128056 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 227503 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 511616 16433238 ~ 16435229 (+)

Expression


Co-expression Network