crbn (crbn,LOC102793823)


Basic Information

Item Value
gene id crbn
gene name crbn,LOC102793823
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15923321 ~ 15937097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52303
GCTAGCTGCCTCCATGTGTTTCCAGtcattatgctaagctaagcttacCAGCTGCTGACTGTATCTTGATAGCCTATTTACCGTGCAGCTATGAGAGTGGTATTTTGATCTTGACACATAGGCTTAATCCTCGGCATTAAAGCAAATTTGTGTAGAAATATGGTCATAACTGTTCTTTAAAGGGTGAtggtttttttatttgaaaatgattACATGTTATTCTTATGGTCTATATataagcaccatgtcatgggtgTACAGTTCTGAGTTGTGTGACATatcacttgaggcaatttaGCAGACTTTACTCAGCTCCCCTCTGCagccacaaaaggctttttTCACATATCCAGTCATATTCCCCAAGACCTGGAAACAGACTTTAATATGTCAAATCggtggagttcccctttaagaatCAGAAAATGTAAACTTCCTCAGAAATGTGACGCATTTATTTTgattacattcacattttaaaacttAGACTTCTTATcatatcattttaaaacaaagGTTTTCACCCTGAAAATACCAGGTAAAAATCTTAAATCGCGTGTTACGCCTATTTAAATTCTGTCATGTCGCTGATTCAGTGTTCGCAGGCTGTCAGACTTTCATTCACCCCCAACAATAAAATAGATAGCCTACTTCACTGAAGAAATCGATGGCATTGTTCTGAAAACagctttttcttgtttttttcattgatATTCAGTGTACCACAAAGTAAAATAAACATGC
>XM_039796379.1
gtgaaaaaggtctatttagGGTGTTCAAATGGGAgcatgagagaaaagaaaaaaagttgggaaccagagaagagacacacaatctcggtggattattttaatttccaATTTTGAGTCTTGTGACACATCGCCAGGGGGCGCTTGGGGTCTGTCTTGACGCTGCACACTGAAGACGCCGTAGAAGAAGAGTTAGTATAGTAAACACAAGGATATGGCTGACGAGAGGGCTGGAGGTGAAGACAACATTAACGACAACATGGGGAACCAGTTACAGCTTTTACCAGAcaacgaggaagaggaggaggaagataaCATGGAGACTGAAGACCGAGACAGTGAGGTAGCAGAGAAGCCCACCCTCATCACCTTTGACCCCAGTCTTCCCACATCACATTCTTACCTGGGTTCAGACATGGAGGAGTTTCACGGCCGTACAGTCCACGATGAAGACAGCTGTCAGACCATCCCTGTGCTGCCACACACAGCTGTGATGCTGGTGCCAGGCCAGACGCTGCCTCTGCAGCTCTTCAGGCCGCAGGAGGTCAGTATGATGCGGAGCATCATCCAGAGAGACCGCACCTTTGCTGTGCTCGCACACAGCAATGACACGGGTGAGCCGGATGCAGAGTTTGGGACAACAGCGGAAATCTATGCTTACCGAGAAGAGCAGGAATATGGCATTGAAACTGTCAAAGTGAAAGCTGTGGGGAGGCAGAGATTCAAGGTCCATGAGATAAGAACTCAGGCAGACGGGATCAGACAAGCCAAAGTACAGATCCTTCCAGAACGAATCCTTCCAGATCCTCTCTCTGCCGTGCAGCTAACACCCCTCTCCAGGCTCCACATGCACCCCTCCTCCAAACCCCCAACTCAGAGCTGCAAACAGGCCCAGCACTGGTGGAATAACTACCAACAGAGGAAGTTTCACTGTGCCAGTCTGACGCCATGGCCACCCTGGGTCTACGCTCTCTACGACTCTGAGTCGCTAATGAACAGAGTGAAGAAACAGCTCCATGAATGGGACGAGAATCTGAAGGATGACTCTCTCCCGACGAACGCCGTAGACTTCTCCTACAGAGTGGCAGCCTGTCTGCCCATAGATGACGCTCTGCGGCTCCAGCTGCTGAAGATCGGCAGTGCCATTCAGAGACTTCGCTGTGAACTGGACATCATGGACCGGGTAAGGAAAGATATCCCACCTGCCTCTTCCTGCAGCTTGTCTCTGTACGGCCCCATGGCTGCATACGTCAACCCTCACGGTTACGTCCATGAAACCCTGACTGTCTACAAAGCAAACAACCTCAACCTGGTCGGCAGGCCATCCACACTGCACAGCTGGTTTCCAGGGTACGCCTGGACAATTGCTCAGTGCCGAACCTGCGGGTCTCATATGGGTTGGAAGTTCACAGCCACCAAGAAGGACTTGACTCCAGCTCGTTTCTGGGGTCTGACCCGTTCAGCTATGCTCCCTCGTATCCCCCAGGAcaagggggaggaggggagacaGGGCTCCCGCCTCTTCTGCCTGTGAAGTTGAACTATTATttatcgtaaaaaaaaaacaacaacaaaaaaactgctAACCCCCCAAGCCTGGATGTTCATGCACTCTCTGGCTGCGATTATCTCTAGTAATCAATGCATCACACAGCGCCTGTCACCCTTAGCAGTAAATCCATCATATTAGTGGAAAGGTCAGTAGGCCTTTAAATGGCGCTCCTAGAGCAAATTAGAACGGAATAGAGGTAGTGATTGTTCTTAAAGGTTTTTGAGATGTAAAAGCAGCAGTGAGACAACTAAGTGCATTGTGAGAAAGTGATGAAGAAATAGAGAATAACAGATTGAACAGATTGTTTCCATGACAGGGCTGACCTGCACCCTCGGtagctgcagacacacaaacacaaaagctatgCTTAATGCATAATTTCCCTTCAACTCCTTTCCTCTGTATGATGGAGAGTTTCATTGCATGCAGCTGAGATAGCAATATTGTTGGTCACATACTTTAATCTGTTGTAAAACCAACCAGTTAATATGAATTATCTTAGCATTCAGATCCTTTTGTGGGTTTCTCAGATATGTTTTTCTCATTTCAGCTGCCGTAAGGTAAGTGGAGGGAATGAAAGGGCACTTGTGTGTAGATCTGTTACTATAGGGGATATTTTGAATCTTGGAATTAGATGTATTTTTGTATGCAGAAAGATTGAAAAGTAATTTAACATAGTCATCCATGTGTGCTTTTTATTATCACATCAGTTTTTTTATGCAATAAACAAAAACTGAGGTGACAATAACCACAATGTGTAATATACTGGTGTATATTGATATGTGCTATAACTGGTGTCGGTTTTGTATTCAACGAAGGTTCATTGTCCTGCCAGATGATGTgcttcaaaaaacaaacaagtggAAATTAGAGATGTCCTGGTGTCTAATGgaggactgtttttttttttctataaaggTTCAAGCTAATTAACACACAGAGCGAGAGAATCTTTTACACATCTTCTTTTAGTTTGTTCATGTGTGGCATGTTAAAATGGTGTGCCTACACCCCAGCTCAGTGTCTTTTGATGAGTTTGATGAATTAGTGAACCACAGATGTCAATAAAAAGGTTGTAAGTGATGAAGAGATAAGATTTACATaattcaacgtttttttttgtggtttgtaCTTTCGCAGTTTTCTGGATTTTACTTCTTGCGATTTTGTTGCAAGGTGCTGGCTCTTGTTTGTATAAATGTAGCTGTAAATAAGAGGCAGTTATAGCATTTTTTGTGCAATATAAATGGTGTTATACTGTTTGTAAGGCTGACTCTTATCTCGCATATATCTTCATGTCACAGGGAATTGTTTCAAAATAATCTTTTCATTAGTAAGTCATTAATCGCAATAAGAAATCCTCTAGATTGTGAAGAGGTTTTGTTGAATTAAATGTTTGGATATTTTCTTGAAGGAAGAAGATTTATACTACTCTCTCATGTCTGTAGGATAAATATTTAGCTAccaccagcagctggttagcttagcatagaacACTGACTGGAAACAGataaacagctagcctggttctgtccaaaggtaacacaaTTTACCTACAAGCaccattacattttattaatcacatatcttgtttgtttaattcatGGAAAAGCcgtgagttaaaaaaaaattgtaagaAAGATAATTTGTGATTTTACAGAGGTTATTGGCTATTTCCTGGATGTGGAGATTCCTGTTCccagttttcacttttttttttttttttttttttttaaattaaataaatgaggcaTTTTTAAACACCGCCAGGCTAGCTGCCTCCATGTGTTTCCAGtcattatgctaagctaagcttacCAGCTGCTGACTGTATCTTGATAGCCTATTTACCGTGCAGCTATGAGAGTGGTATTTTGATCTTGACACATAGGCTTAATCCTCGGCATTAAAGCAAATTTGTGTAGAAATATGGTCATAACTGTTCTTTAAAGGGTGAtggtttttttatttgaaaatgattACATGTTATTCTTATGGTCTATATataagcaccatgtcatgggtgTACAGTTCTGAGTTGTGTGACATatcacttgaggcaatttaGCAGACTTTACTCAGCTCCCCTCTGCagccacaaaaggctttttTCACATATCCAGTCATATTCCCCAAGACCTGGAAACAGACTTTAATATGTCAAATCggtggagttcccctttaagaatCAGAAAATGTAAACTTCCTCAGAAATGTGACGCATTTATTTTgattacattcacattttaaaacttAGACTTCTTATcatatcattttaaaacaaagGTTTTCACCCTGAAAATACCAGGTAAAAATCTTAAATCGCGTGTTACGCCTATTTAAATTCTGTCATGTCGCTGATTCAGTGTTCGCAGGCTGTCAGACTTTCATTCACCCCCAACAATAAAATAGATAGCCTACTTCACTGAAGAAATCGATGGCATTGTTCTGAAAACagctttttcttgtttttttcattgatATTCAGTGTACCACAAAGTAAAATAAACATGCAGTTATCCTGTGA

Function

symbol description
crbn Predicted to enable metal ion binding activity. Involved in fin development; limb development; and otic vesicle development. Acts upstream of with a positive effect on cell population proliferation. Acts upstream of or within embryonic pectoral fin morphogenesis and otic vesicle morphogenesis. Part of ubiquitin ligase complex. Is expressed in several structures, including cranial vasculature; nervous system; notochord; otic vesicle; and radial glial cell. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human CRBN (cereblon).

NR:

description
protein cereblon

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0004176 ATP-dependent peptidase activity molecular_function

KEGG:

id description
K11793 CRBN; cereblon

RNA

RNA id representative length rna type GC content exon number start site end site
TU52303 False 744 lncRNA 0.37 1 15936341 15937084
XM_039796379.1 True 4076 mRNA 0.42 10 15923321 15937097

Neighbor

gene id symbol gene type direction distance location
pa2g4a pa2g4,LOC104933448,LOC102793326 coding upstream 9702 15903500 ~ 15913619 (+)
erbb3a erbb3 coding upstream 23420 15879790 ~ 15899901 (+)
arf3b arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding upstream 46461 15871718 ~ 15876860 (+)
LOC120557571 ikzf4 coding upstream 63550 15851997 ~ 15859771 (+)
LOC120556934 LOC104941416,LOC101064200 coding upstream 89387 15824383 ~ 15833934 (+)
vhl vhl,LOC104941408 coding downstream 5667 15942764 ~ 15945552 (+)
tatdn2 NA coding downstream 11352 15948449 ~ 15960280 (+)
LOC120558102 LOC104943766 coding downstream 54637 15991734 ~ 16011506 (+)
prkcda prkcd,LOC104933455 coding downstream 79882 16016979 ~ 16034962 (+)
rft1 rft1 coding downstream 98877 16035974 ~ 16039274 (+)
LOC120557201 NA non-coding upstream 1699 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 8420 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 161006 15760792 ~ 15762315 (+)
G38852 NA non-coding upstream 168262 15673979 ~ 15755059 (+)
G38860 NA non-coding upstream 193921 15727979 ~ 15729400 (+)
G38966 NA non-coding downstream 47527 15984624 ~ 15985096 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 258282 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 297917 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 566341 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 615587 16552684 ~ 16556205 (+)
G38834 NA other upstream 275470 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 1048862 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 1066252 14765297 ~ 14857069 (+)
G38517 NA other upstream 1106885 14808352 ~ 14816436 (+)
cdk4 LOC107684003,LOC107701179 other upstream 1165962 14740609 ~ 14757359 (+)
ccdc174 ccdc174 other downstream 28305 15965402 ~ 15974237 (+)
eefsec eefsec,LOC102787825 other downstream 112581 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 212028 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 496141 16433238 ~ 16435229 (+)
G39116 NA other downstream 580439 16517536 ~ 16543580 (+)

Expression


Co-expression Network