ccdc174 (ccdc174)


Basic Information

Item Value
gene id ccdc174
gene name ccdc174
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15965402 ~ 15974237 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52306
ACCAACGAAGAAATCAGGCTTCAGGCACAGTTAGCAGTGGCTCGGACATTATGGTGTAGAAGAGAAGTAGTAAACATGGATAAAAAGAAGAAACCCTTCGATGTGACTGCTTCATCGCTGGTGGACCTTAAAGCTGAACTGTACAGAAAGCAGGAACAATTCAAACAAGAAAAACTCGGCCATGAAAATACTGGTGCTGGATTCACATCAAAATCCAAACTCAAGAAACCTAATGTCTGGAGCAAACAAAACGCTGGCGTTTCAGCAAGAGCTGAAAAAGATGCAGAGCAGCTGACCGAGGAGCAGTGCAGCCTGGATACATCAAAGTGAGTTCAACACATTATACAGAGGAGACTTTTACTGTCATAATACAGCGGGGACC
>XM_039796380.1
AGCGAGAGAACCACCAACGAAGAAATCAGGCTTCAGGCACAGTTAGCAGTGGCTCGGACATTATGGTGTAGAAGAGAAGTAGTAAACATGGATAAAAAGAAGAAACCCTTCGATGTGACTGCTTCATCGCTGGTGGACCTTAAAGCTGAACTGTACAGAAAGCAGGAACAATTCAAACAAGAAAAACTCGGCCATGAAAATACTGGTGCTGGATTCACATCAAAATCCAAACTCAAGAAACCTAATGTCTGGAGCAAACAAAACGCTGGCGTTTCAGCAAGAGCTGAAAAAGATGCAGAGCAGCTGACCGAGGAGCAGTGCAGCCTGGATACATCAAAATCTATTTTGAGTCTAAACAGATCATTGATGCCCCTTTCAGTGTTTGCTCAGTCTTTGTTTCTCAAAGCTATATCTTACATCTGCCCTGTCCTTCAGACAACAGACCAGCGCACTAAGAGGGAACATCTGAAGGACAAGAGGCAGGTCATCCTGCAGGCCCGACTGGCCAAGGTGAGGCAGAGGAAGATGAAGAAGGCCAAGCTGGATGGCACCGAGGATGAGCAAAGAGCGGAGGACAATGAAGTCCTAGATGGTGAGGACAAAGGTGAATTAATAGGACCCTCGCCTCCACCAGAGGACTCCTTGGAGGTTAGCAGACTGAAGAAGGTGGAAGTGGAGATCCAGGAAAGAAAGGACACCAAACCAGGAGTTCCTCATGTCAGAGAATGGGACAGAGGCAAAGAGTTTATGTTTAGTGAGTGGACAACTCGGCGCCGCGAAGAGCGAGAGTCAGAATTTGCACCTCCCTCTGCGTACTTTAatgaggggaagagagagagaccgggGAGGAATAAAACTCAGCAGAATAAATCCAAGATGTCCTTCAAGTGGACCAAAAGCCCAGGAGGAACCTCTGAGAGCAAAGAGGAGCCACAGTTTCAGCCTAAAACTGCTCCTTCACCTCCTCAACCTCAACAAAATCCTCCACCTCCTTCACATCCACAGAACTCCTCGCAAAATCCTCCACCCCCTTCCCATCCACAGAACTCCTCGCAGTCATCCCCTTCAGATCACCCAGCAGATTCAGCTCCTGTGTCTACTCCTCCTTTTCATCCCCACTATCCCCCTCCTTCATTTTATCCTCCACCCCTGCCTCAGTTTGCTGGACCACCTCACCTACTTCCTCCGTTTCCCCCACAGTACCCGAACCAGTATCACCCCCAGTATCCCGCTCAATATCCACCTCCGCTGCAGAGCCAGTCTCCGCCTCAGCAGCCCCCACAGCCTGTAGACCTCAGCCACGCCCGGCAGCCTGCACAGAGTCTAGACGACATGCTCTCCTTCTACAGGAACACTACCTGATCTCTAAGATATCATGTATGCTTTGTAGTTGCTTCATATTGAGAGTGTAAATACTGcggtttcctttttctttttaggaAATCATAGAAAAATCAGAACACAAATTCTCAGCTCTTTGGAGTTTAAGCATTTAATAAATATCAGGAGTTTAACTGGA

Function

symbol description
ccdc174 Predicted to be active in nucleus. Orthologous to human CCDC174 (coiled-coil domain containing 174).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K25178 CCDC174; coiled-coil domain-containing protein 174

RNA

RNA id representative length rna type GC content exon number start site end site
TU52306 False 382 TUCP 0.44 3 15965414 15966107
XM_039796380.1 True 1519 mRNA 0.48 6 15965402 15974237

Neighbor

gene id symbol gene type direction distance location
tatdn2 NA coding upstream 5122 15948449 ~ 15960280 (+)
vhl vhl,LOC104941408 coding upstream 19850 15942764 ~ 15945552 (+)
pa2g4a pa2g4,LOC104933448,LOC102793326 coding upstream 51783 15903500 ~ 15913619 (+)
erbb3a erbb3 coding upstream 65501 15879790 ~ 15899901 (+)
arf3b arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding upstream 88542 15871718 ~ 15876860 (+)
LOC120558102 LOC104943766 coding downstream 17497 15991734 ~ 16011506 (+)
prkcda prkcd,LOC104933455 coding downstream 42742 16016979 ~ 16034962 (+)
rft1 rft1 coding downstream 61737 16035974 ~ 16039274 (+)
mustn1a mustn1 coding downstream 65576 16039813 ~ 16041213 (+)
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding downstream 187723 16161960 ~ 16167138 (+)
LOC120557201 NA non-coding upstream 43780 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 50501 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 203087 15760792 ~ 15762315 (+)
G38860 NA non-coding upstream 236002 15727979 ~ 15729400 (+)
G38858 NA non-coding upstream 243218 15718996 ~ 15722184 (+)
G38966 NA non-coding downstream 10387 15984624 ~ 15985096 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding downstream 221142 16195379 ~ 16195784 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 260777 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 529201 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 578447 16552684 ~ 16556205 (+)
crbn crbn,LOC102793823 other upstream 28305 15923321 ~ 15937097 (+)
G38834 NA other upstream 317551 15645511 ~ 15647851 (+)
calcoco1b LOC104959845,LOC103376572 other upstream 1090943 14865059 ~ 14874459 (+)
znf740a LOC107385642,LOC101469799,LOC102214350,LOC102304359,LOC103376569,LOC107082105,LOC100709046 other upstream 1108333 14765297 ~ 14857069 (+)
G38517 NA other upstream 1148966 14808352 ~ 14816436 (+)
eefsec eefsec,LOC102787825 other downstream 75441 16049678 ~ 16060330 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other downstream 174888 16149125 ~ 16158362 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 459001 16433238 ~ 16435229 (+)
G39116 NA other downstream 543299 16517536 ~ 16543580 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 990380 16964617 ~ 17046696 (+)

Expression


Co-expression Network