G39052 (LOC101067125,LOC103386161,LOC103365890)


Basic Information

Item Value
gene id G39052
gene name LOC101067125,LOC103386161,LOC103365890
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16195379 ~ 16195784 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52421
CAGCCACCGTGTCTAAAAACTATAACATTTATAATACTGGCACAAATGCAGTGTACAGCCAACACTCACCAACATAATATGGAGTGTAACAGGGAGTTTGGAGGGAGTTGTGCAGTGTCGTCTCCTTAGCAAAGCCAAAGTCAGTCAGTGTCAGTGTGGCGTTACTCTCCTTGGTGGTATAGAGCAGGTTTTCAGGctTCACATCCCTATGAGCGATGTCCATGTGGTGGAGGTACTCTATGGCCGTGCCGATGTCATGCATGATCTCTGACGCCTCTGATGGACAGACATGACATAGATGTAACATGTACGGGACACAGCATAGAGAC

Function

NR:

description
PREDICTED: MAP kinase-activated protein kinase 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52421 True 329 lncRNA 0.47 2 16195379 16195784

Neighbor

gene id symbol gene type direction distance location
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding upstream 28241 16161960 ~ 16167138 (+)
mustn1a mustn1 coding upstream 154166 16039813 ~ 16041213 (+)
rft1 rft1 coding upstream 156105 16035974 ~ 16039274 (+)
prkcda prkcd,LOC104933455 coding upstream 160417 16016979 ~ 16034962 (+)
LOC120558102 LOC104943766 coding upstream 183873 15991734 ~ 16011506 (+)
emc3 emc3,LOC101173295,LOC101079695 coding downstream 367081 16562865 ~ 16566395 (+)
usp4 usp4,LOC102796025 coding downstream 370917 16566701 ~ 16578215 (+)
fancd2 fancd2 coding downstream 388628 16584412 ~ 16605415 (+)
tex264a tex264,LOC102797020 coding downstream 410667 16606451 ~ 16681516 (+)
grm2a LOC103368479 coding downstream 488024 16683808 ~ 16716227 (+)
G38966 NA non-coding upstream 210283 15984624 ~ 15985096 (+)
LOC120557201 NA non-coding upstream 273757 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 280478 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 433064 15760792 ~ 15762315 (+)
G38860 NA non-coding upstream 465979 15727979 ~ 15729400 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding downstream 39230 16235014 ~ 16251725 (+)
G39113 NA non-coding downstream 307654 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 356900 16552684 ~ 16556205 (+)
G39143 NA non-coding downstream 383301 16579085 ~ 16579722 (+)
G39195 NA non-coding downstream 586627 16782411 ~ 16782618 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 37017 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 135049 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 221142 15965402 ~ 15974237 (+)
crbn crbn,LOC102793823 other upstream 258282 15923321 ~ 15937097 (+)
G38834 NA other upstream 547528 15645511 ~ 15647851 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 237454 16433238 ~ 16435229 (+)
G39116 NA other downstream 321752 16517536 ~ 16543580 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 768833 16964617 ~ 17046696 (+)
G39351 NA other downstream 916329 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 997367 17193151 ~ 17198217 (+)

Expression


Co-expression Network