G39076 (LOC104930492,LOC103358728,LOC102300171,LOC101465142)


Basic Information

Item Value
gene id G39076
gene name LOC104930492,LOC103358728,LOC102300171,LOC101465142
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16235014 ~ 16251725 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52459
GTAGCTTTTACCACAAATGaatgcctttatttattttcaagaCACTGTTAACACATAGGTATACAAGAGACATTTTGGCTCTtgcaataacaaaataaatcaaagtcGGTATCCGAACAGATAGAGTGGTAATATGGAATGTAGcggtttccattttttttaaaacaatccTTCCAGATAAATAGTCTTTATATAGTCTTTGCAGCTAgtgtttttaaatcaatatattCTTTGTTTAGACAAAGTTTCAGGAATGAAGAAGAGAAAATCAGAAGAAAACAGAGACAGTGACGAAACTAGAATattacccttttcaaaaagtctTTCGTTTATAGGCAAAAAAGGAGGAGagcaaatgatgaaaaaaaggcAAATCCCTTCTTCTAGACCTAAATGGATGCTACAGGAGTCAGGGTTAGTTTGTTGAGAGACTGAACTCTTATACAACATTTCTCCTACCATATATAACAAAGAAAAGGAGCAGTCCCAGAAAGACAAAAGTGCAAGTAAGGGCACAGACAGCCCTGTCCTGTGGCAGGTGAGGGAGAGCGGAGGAATGACCACAGACTCTCCCCTGACCCCGAGGTGTCTGAGGTTCCCTCCAAGCAGAGGAGGGTCAGGCCCCCATAGGCGTAAGGACGATGCACCTTAGAGTAGCAGGATTTCAGCTCATGAGCTCTTCCCATGCTTGAAATTTAGATCATGTTGGCTCCAGTCCTCCCAGTCAGTACTGTGATCCTCCACCTGGGAAATGATGGTGATCAGGTTCTGGAGTCCAAAAATGAAACCACTGTCCTGGCCTTCATGCACCACACTGTCCTCTCCGTAGTGCCGACAGGTGGTGTGAGCAAAGTCAATCATGCGCACGTCCACCACGGGGCTGCTGGCCTCTCCTGGGCTGTGGGAGGAGCGACTGCTGCCACTGTTGCTGCTCCCTCCAGCCACGCTAGCACTGCCACCGGCTGAGGAGGAACGAGGGAAACCAAaggccccttcctcttcctcgtcTTCTTCATCAGACGGCTCATCCTCATCGCCTTCTTCCCCACCACGGTGTCTAGGTCTAGTAGGAGTCCTGGGAGGGTCTCCGTCATAGATAATGAGCAGGGAGCTGGAGTAGAAGCGGTACGACTCGCAGGCCTCCAGGGCAGCTTGCATTTCCCGGAGTCTGCGCAGCACTGGAGACAGCAGCTCTCGCCGTAGGCAACGCCCGTTGTGAAAGAACTGGTAGAGTGCCTCCTTGAAGCCTGCCAGAGTCAGCTTACGGCCATGGTATTTGTTCATAAACATTAGCTGGCCCGAGTCCGACTGGTACACCTGCATGCCACAAAGTCGCACTCCAATAGAGGCAGATGTGCTCTGTTGACACTTCCGCATATGATGGGCTTTCTTCTCCTCCGATGCATCATCCCCATGTTGGCGAGTTCCCATCTTCAAGTCTAAGACACATGGTACTGTGTAGCGCCATGTCAGGTTCTCCAAAAGAATAAATTTGTATTGGTTACGGTGCTTTGCATTCTCTTTCATCCTCTGCAAGTGCTGCTGGTGACATTTGAGAGTCCAGGGGTTGTGTTTGATCTGTGGCACCACGTTGCTTTTTTCCAAGCTGAAGAAGAGAACCTCTGCCTCCTCACGATTATAACTCACGATCTTGTCTTCTTTTCGGCTGTGTTGAGCTCGGTCTTTGCTGTAGTTGTCATTGTCCAGAAGCGACGAGGACGGTTTCTTGTTGCTCCACTTTAGCATCTTGCTCTTGGGCTCACAGTCTGCTGAGGGATCTTTGTTTTCCAGGTCCCCTGATTCGCTGTGGAGGGGGTAGGCGATGAGGCACAGGTTCCCTTCCTCATCCTCTTCAAAACTGACTGACACTACGCCTTTATACTGAGGGGTGAACTTCCTCATCTCTGGAGGGAGGCTCTCGTAGAACTGGTGCTCCCGGGGGATGAGGGGTTTGCATATTGTTTGTTCCCCAAATCGTAGCACACAAGAGTGGCCTCCCACCTGGTGCACGAATGGCTCAAGCATCACCCCTTTTCCGGGATATGGAGTCCCGTCGGCCTGCATGAGGGCTTCCAGAGCGGGACTCATCCTCACTCCGAATCGAACAAATGAGCTGGGGGGCCCCACGTCGCTCGGGAGGCAAGCGGCTCGGCCGCTCGTTTGACTCCCTATCCTCGAGCTCTTTTCTGTTCGCTCGCGCGGGGGCGCTGCTGGTCGTCTGCTCAAGCACAGCAGTGAAAAACAAAGGGTTGAACAGGAAGGACAGAGGACACAACAAAACCCCCGTATtccctttcttttcctttacGAAGGACAAATGATAAAACTCCTCCGCTGGGTTGGACAATCTCCGTGTATGTACGTGTAATAAAATGCTACTTATGCAGCTTTAAAGCTGTTTAAAACGTTTTCAAGCGACGTGCGTTTCTGTCGTCTTCACCGCCTGGCTAAAGACATGC

Function

NR:

description
PREDICTED: inositol hexakisphosphate kinase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52459 True 2459 lncRNA 0.50 6 16235014 16251725

Neighbor

gene id symbol gene type direction distance location
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding upstream 67876 16161960 ~ 16167138 (+)
mustn1a mustn1 coding upstream 193801 16039813 ~ 16041213 (+)
rft1 rft1 coding upstream 195740 16035974 ~ 16039274 (+)
prkcda prkcd,LOC104933455 coding upstream 200052 16016979 ~ 16034962 (+)
LOC120558102 LOC104943766 coding upstream 223508 15991734 ~ 16011506 (+)
emc3 emc3,LOC101173295,LOC101079695 coding downstream 311140 16562865 ~ 16566395 (+)
usp4 usp4,LOC102796025 coding downstream 314976 16566701 ~ 16578215 (+)
fancd2 fancd2 coding downstream 332687 16584412 ~ 16605415 (+)
tex264a tex264,LOC102797020 coding downstream 354726 16606451 ~ 16681516 (+)
grm2a LOC103368479 coding downstream 432083 16683808 ~ 16716227 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding upstream 39230 16195379 ~ 16195784 (+)
G38966 NA non-coding upstream 249918 15984624 ~ 15985096 (+)
LOC120557201 NA non-coding upstream 313392 15919385 ~ 15921622 (+)
G38948 NA non-coding upstream 320113 15914539 ~ 15914901 (+)
G38885 LOC104942130 non-coding upstream 472699 15760792 ~ 15762315 (+)
G39113 NA non-coding downstream 251713 16503438 ~ 16510185 (+)
G39134 NA non-coding downstream 300959 16552684 ~ 16556205 (+)
G39143 NA non-coding downstream 327360 16579085 ~ 16579722 (+)
G39195 NA non-coding downstream 530686 16782411 ~ 16782618 (+)
G39196 NA non-coding downstream 533023 16784748 ~ 16785065 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 76652 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 174684 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 260777 15965402 ~ 15974237 (+)
crbn crbn,LOC102793823 other upstream 297917 15923321 ~ 15937097 (+)
G38834 NA other upstream 587163 15645511 ~ 15647851 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other downstream 181513 16433238 ~ 16435229 (+)
G39116 NA other downstream 265811 16517536 ~ 16543580 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 712892 16964617 ~ 17046696 (+)
G39351 NA other downstream 860388 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 941426 17193151 ~ 17198217 (+)

Expression


Co-expression Network