G39143


Basic Information

Item Value
gene id G39143
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16579085 ~ 16579722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52557
cttaagAGCAATCCCTACTGGGTGCAGGCATGTGGAGCCACTTGTTTTACCTTCAGTGATCATAGTACACCACTCGGCTGTTAAAGTAAAATAAGGCAACGTTGTCTAAATTGGTAGCATAAGAGAATAATCCTTTTGTTTTATCTTAATGCAGTCTTTACAGACACACAATTATCCCAAGAAGCAGTTTTTACAGGTGACTTGTGTGAGTGTGACGGAGCATAAAACACATTTACTTAGTCGGTCTCGAGGGTCTTCTAGTGAAACCAGATGGCGGTTAGTACTTAATGGATCTATTTCCGTAAGTCTTGTTCTGTGGCATAAAGTATGCACTTACAGCATGTTAACATGAAGGGCCTCCaagtgccctttttttttttttgctagttGGGCCAGCCAATCATGTTGTTCAGCGATGACTACCTAAATATAATCATTTAAACCTAATGCCTAGAAAAGCTTTACATCATACCTGTAATCCTAGATACTTGGTTGAAAACAAAATCCAGCTGCCGAACGCAGCGAATCTTAAAATCACAACAGCAATCCAAACTTGAAAAATAACAAAGAGATGTAAATAATCACACTATTGAAAATAGGTGTACAAATCCTTGTCCTCATATTTATCTTATTCCCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52557 True 638 lncRNA 0.38 1 16579085 16579722

Neighbor

gene id symbol gene type direction distance location
usp4 usp4,LOC102796025 coding upstream 870 16566701 ~ 16578215 (+)
emc3 emc3,LOC101173295,LOC101079695 coding upstream 12690 16562865 ~ 16566395 (+)
arpc4 arpc4,LOC103358720,LOC100696600,LOC103385929,LOC107721188 coding upstream 411947 16161960 ~ 16167138 (+)
mustn1a mustn1 coding upstream 537872 16039813 ~ 16041213 (+)
rft1 rft1 coding upstream 539811 16035974 ~ 16039274 (+)
fancd2 fancd2 coding downstream 4690 16584412 ~ 16605415 (+)
tex264a tex264,LOC102797020 coding downstream 26729 16606451 ~ 16681516 (+)
grm2a LOC103368479 coding downstream 104086 16683808 ~ 16716227 (+)
parp3 parp3 coding downstream 138558 16718280 ~ 16722817 (+)
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding downstream 144437 16724159 ~ 16730016 (+)
G39134 NA non-coding upstream 22880 16552684 ~ 16556205 (+)
G39113 NA non-coding upstream 68900 16503438 ~ 16510185 (+)
G39076 LOC104930492,LOC103358728,LOC102300171,LOC101465142 non-coding upstream 327360 16235014 ~ 16251725 (+)
G39052 LOC101067125,LOC103386161,LOC103365890 non-coding upstream 383301 16195379 ~ 16195784 (+)
G38966 NA non-coding upstream 593989 15984624 ~ 15985096 (+)
G39195 NA non-coding downstream 202689 16782411 ~ 16782618 (+)
G39196 NA non-coding downstream 205026 16784748 ~ 16785065 (+)
G39197 NA non-coding downstream 206109 16785831 ~ 16786051 (+)
G39210 NA non-coding downstream 239024 16818746 ~ 16823256 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding downstream 468213 17047935 ~ 17048365 (+)
G39116 NA other upstream 35505 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 143856 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 420723 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 518755 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 604848 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 384895 16964617 ~ 17046696 (+)
G39351 NA other downstream 532391 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 613429 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 791761 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 1028208 17607930 ~ 17609216 (+)

Expression


Co-expression Network