G39210


Basic Information

Item Value
gene id G39210
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16818746 ~ 16823256 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52633
TTTAGACATGCAAGGCTAGGTGGTAAATCTGCTTCAATCCGTAGGGCCATCtccaaaattctgaaccacccTTTTAAACAACAAACGCAGCTAGGCCTTTTTAAGAAAgaaaattgtttttgtttcagtcaATCAATCTGTGATCAGAAATCAAAGTCCCGCTCGAAGGGATGCAAGACGCCTCTTACGTCATTTGACGACTTCCGCTGAGTTGGAGGTTCTGTAAATAAACAGATTTGAGCATTAAGGCTACATTAGTTTACATAGTACATAATTTTTTCTCCTAAATTTACGACTTTACGAACAGGAAAGCTAAGTGTAGAAAATGAGTATTCCAGAACAACTGACTAACAAGTGGTGCCTCTACAACAGCCTTGCTACTCTTCATTTCAGCTGATAAGGACACAAGTTATCCTGGATGACAAGTTCACCATCTCCATCTTCTCCTGTCTACTCCAGTCAGCTGGCTCCACCACACGGATCCCCTCCCTCGGCACCCTGCTCCAGCCTCTCCTCAGTCCTTCTGCTCTCCAGTCCCAGCCTCTCTCCCTCGGCTCCTCGGCTACGGCTTCCCCGCGCTCCCCTGAGTCACCAGCCCCAGTGTCTCTCCCACGGCTCCCCGGTCACAGCTCCCCTGGATATCTCCACCCTCCAGTTCCTCTAGCCTCCCCGCAGCTGCTCCCCCATTCCCGGCGTCTGCCTCCCCACTTCCCCTTTCCTTTCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52633 True 725 lncRNA 0.50 2 16818746 16823256

Neighbor

gene id symbol gene type direction distance location
cav3 cav3,LOC107093348 coding upstream 77234 16738036 ~ 16741512 (+)
LOC120557897 LOC104966248,LOC103368476,LOC102798401,LOC101469442,LOC105924440,LOC106583184 coding upstream 83440 16733386 ~ 16735306 (+)
gpr61l LOC104930496,LOC103368477,LOC104957521,LOC100694581 coding upstream 88730 16724159 ~ 16730016 (+)
parp3 parp3 coding upstream 95929 16718280 ~ 16722817 (+)
grm2a LOC103368479 coding upstream 102519 16683808 ~ 16716227 (+)
thumpd3 thumpd3,LOC102800238 coding downstream 73814 16897070 ~ 16906824 (+)
LOC120557149 LOC104950923,LOC103362905 coding downstream 84586 16907842 ~ 16916563 (+)
LOC120557990 LOC103362904,LOC104928138 coding downstream 94565 16917821 ~ 16962625 (+)
wdr77 wdr77,LOC102777617 coding downstream 177918 17001174 ~ 17004437 (+)
LOC120558021 LOC103362897,LOC103385872,LOC104928123,LOC104950934 coding downstream 195694 17018950 ~ 17020740 (+)
G39197 NA non-coding upstream 32695 16785831 ~ 16786051 (+)
G39196 NA non-coding upstream 33681 16784748 ~ 16785065 (+)
G39195 NA non-coding upstream 36128 16782411 ~ 16782618 (+)
G39143 NA non-coding upstream 239024 16579085 ~ 16579722 (+)
G39134 NA non-coding upstream 262541 16552684 ~ 16556205 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding downstream 224679 17047935 ~ 17048365 (+)
G39304 LOC103362894 non-coding downstream 226541 17049797 ~ 17053951 (+)
G39308 NA non-coding downstream 257410 17080666 ~ 17082576 (+)
G39358 strip1 non-coding downstream 334647 17157903 ~ 17159236 (+)
G39427 celsr2 non-coding downstream 465183 17288439 ~ 17289516 (+)
G39116 NA other upstream 275166 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 383517 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 660384 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 758416 16049678 ~ 16060330 (+)
ccdc174 ccdc174 other upstream 844509 15965402 ~ 15974237 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other downstream 141361 16964617 ~ 17046696 (+)
G39351 NA other downstream 288857 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 369895 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 548227 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 784674 17607930 ~ 17609216 (+)

Expression


Co-expression Network