G39308


Basic Information

Item Value
gene id G39308
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17080666 ~ 17082576 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU52750
TCAGCAGCTCCACATCATTGGTAAAATTCTGAGAATGCATCcaaaatgttttacaaacaTAGAAACTCTTTATTACAACAGTATCTCTCACTCAAGATTTAGGCGTGTATTTTTTCTAAAACACATTCATATCATTGCAGTACAGTGGAATtcatccttttattttttttatcacagcaTAAAAACAATCTCTGAACATGTGAGAATCCTAAAACAAACGTTCACCGTCATTCACAATGTGGGATATTTTAGATGTGATGAAAAGAGGATAAGCTCAACAAGCTTTTGATTTTGGATCGGTATCATCACtcaaagggccctatcttgcacccagcgcaattgactttgtacacgGACGTaggtatcattcctattttgcacccgacgcacagcggacttttccctccacagacgcaagtcggtaaattagggaacgAATTTGCgttcccgggggcggttcagcgaaaagaggaggcgtgttcaggcgcaaacgttccctggtgctattttgcagtttcagaaaacaattccgccactgaccaggaaaaacctggtctaaagtcagtggcgctagtctaaagtcagtggcgcgttattcagatgctattttaggggcgcatgcttggccataatgtagcgtgcgcacaacgcgcatacaccttGCTTCCCtaatctacacggacgcagcagttcccatttttgcaaaccatacataattacaaggaaaaatattactgaaaatgcgcttcaggtgtttggatagatcaggaggcactttacagtacagtcctcaaaaagttgcagcattctttgtggcttgttgtgttttacacaacatttccatgaatcatggatgtgttgatgacataaatgaggaaatattagaggacttaaggagacgtgatgttgaactacggtgggattggacacttgagggtccgggagtggcaatgcggtGTGGTGGAgtgggtggacggagatggagttgggggaggaggaaggggcacaacaggtgcaggtggtgcgtttggaggcccacgctccatggctgcagcaatcctctccagacttgaggagatgcgcccgagaggctgcagcaacatcgccacccggtcaagacaggcatttattactttgccgcatcccggacagctcccgctggtgtgcgccaggcaaatccgccatcataatagcaatccgccatggaacaagcgcgcctgctcttaaagggaatgtgagatgacgctctgattggttattttcacgttacgcccaaaccacacctagctatttacttcagaccaacccattttagatttgcgtcgagatccgcccacaaagctacttgcgttttgcgtttcatacttgcgtttcagatcgttaaaatagggcccaaagaATATCTTAAAAACCCTGTATCCACACTACGTAAGAAAGTCCTTTCAATCAAACATTTACACATATAGTTTATCATATATATCcctaatagttttttttttaataaaataccaCTTCATCTCATCATCAAAAACTAGGCAGAGTCTGCACAATCATTTCTAATAAACGAGCAAATCACATCTGCTATAGTCTCCTTGCAACATTAGAATATTGTCCAAGTGTGATACTTGACGTGGAACTGCGCAGGACtgtaaaataatgtttatttcctGCATGTGAGGTACTGTAAAAACCCTGATGAACAGGGTCAaactaaatctaaatgtattctCCATCCGGATAAAAATCTCCACAACTGAAAAACAAACGAGACAGTTACATACACGTAAAAAAATATCAGCCTCCTTGTAATGGAATTCTTAACAAATACTTACACTcactaatcaaaataaaaatgggCATGCTGAGCTAAACACAACCCTAAACCTACAGTTTTactaaacataacataac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU52750 True 1911 lncRNA 0.43 1 17080666 17082576

Neighbor

gene id symbol gene type direction distance location
eps8l3a NA coding upstream 37853 17034719 ~ 17042813 (+)
irf6 irf6 coding upstream 47972 17027709 ~ 17032694 (+)
LOC120558021 LOC103362897,LOC103385872,LOC104928123,LOC104950934 coding upstream 59926 17018950 ~ 17020740 (+)
wdr77 wdr77,LOC102777617 coding upstream 76229 17001174 ~ 17004437 (+)
LOC120557990 LOC103362904,LOC104928138 coding upstream 118041 16917821 ~ 16962625 (+)
LOC120558072 LOC103362892,LOC104950939 coding downstream 15121 17097697 ~ 17102777 (+)
LOC120557584 LOC104939527,LOC103362890,LOC102214906,LOC102790228 coding downstream 44819 17127395 ~ 17144727 (+)
cdkn1a NA coding downstream 121075 17203651 ~ 17208659 (+)
tmcc2 tmcc2,LOC102788388 coding downstream 127324 17209900 ~ 17216157 (+)
bysl bysl coding downstream 147064 17229640 ~ 17234758 (+)
G39304 LOC103362894 non-coding upstream 26715 17049797 ~ 17053951 (+)
G39302 LOC102778475,LOC101478284,LOC100692415 non-coding upstream 32301 17047935 ~ 17048365 (+)
G39210 NA non-coding upstream 257410 16818746 ~ 16823256 (+)
G39197 NA non-coding upstream 294615 16785831 ~ 16786051 (+)
G39196 NA non-coding upstream 295601 16784748 ~ 16785065 (+)
G39358 strip1 non-coding downstream 75327 17157903 ~ 17159236 (+)
G39427 celsr2 non-coding downstream 205863 17288439 ~ 17289516 (+)
G39433 NA non-coding downstream 215416 17297992 ~ 17298192 (+)
G39437 NA non-coding downstream 224479 17307055 ~ 17307707 (+)
G39434 NA non-coding downstream 269130 17351706 ~ 17395822 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 33970 16964617 ~ 17046696 (+)
G39116 NA other upstream 537086 16517536 ~ 16543580 (+)
G39104 LOC103385912,LOC104930488,LOC103358732,LOC101079922 other upstream 645437 16433238 ~ 16435229 (+)
LOC120557902 rab7,rab7a,LOC102230535,LOC106583206,LOC105017191,LOC101061812 other upstream 922304 16149125 ~ 16158362 (+)
eefsec eefsec,LOC102787825 other upstream 1020336 16049678 ~ 16060330 (+)
G39351 NA other downstream 29537 17112113 ~ 17119890 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other downstream 110575 17193151 ~ 17198217 (+)
LOC120557637 minos1,LOC103357934 other downstream 288907 17371483 ~ 17377560 (+)
G39581 LOC104949003,LOC103357913 other downstream 525354 17607930 ~ 17609216 (+)
LOC120556838 NA other downstream 637865 17720441 ~ 17734011 (+)

Expression


Co-expression Network