XLOC_005087



Basic Information


Item Value
gene id XLOC_005087
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3569747 ~ 3570081 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00011070
GTGACATGCTGCAAAGTAAAATATTTTGACAGTATTTAAACCTCTCTTGGTGATAACGGAAGAATCGGGCTGCTTCTGCGTTAAAGGCGCCCCCTGCAGAGACCAGAGAAACCTCAGCTTTGGAGAGGTGTCTTTAGACATTTTAACCGACATTCTGTCCAAcctcaacaacaaaaacaaatccaATTTGGAGAAGGTGTCAAATATGTGTGGCTGTCTGAAAGAAAGGAGAATAGTAGG

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00011070 True 240 lncRNA 0.43 2 3569747 3570081

Neighbor


gene id symbol gene type direction distance location
XLOC_005086 NA coding downstream 25731 3519168 ~ 3544016 (-)
XLOC_005085 TANC2 coding downstream 116158 3314504 ~ 3453589 (-)
XLOC_005084 lsm12b coding downstream 270598 3287783 ~ 3299149 (-)
XLOC_005083 NA coding downstream 284838 3281756 ~ 3284909 (-)
XLOC_005082 gngt2b coding downstream 317484 3249054 ~ 3252263 (-)
XLOC_005088 CABZ01069040.1 coding upstream 81934 3652015 ~ 3705862 (-)
XLOC_005089 vps25 coding upstream 143995 3714076 ~ 3721957 (-)
XLOC_005090 tlcd3bb coding upstream 170524 3740605 ~ 3756405 (-)
XLOC_005091 MAZ coding upstream 196476 3766557 ~ 3778848 (-)
XLOC_005092 NA coding upstream 212540 3782621 ~ 3786382 (-)
XLOC_005073 NA non-coding downstream 825106 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 900247 2625669 ~ 2669500 (-)
XLOC_005071 CU929359.1 non-coding downstream 952237 2579237 ~ 2617510 (-)
XLOC_005094 NA non-coding upstream 290383 3860464 ~ 3865234 (-)
XLOC_005102 NA non-coding upstream 519656 4089737 ~ 4129820 (-)
XLOC_005103 NA non-coding upstream 573513 4143594 ~ 4169699 (-)
XLOC_005105 NA non-coding upstream 619941 4190022 ~ 4194304 (-)

Expression



Co-expression Network