G39516


Basic Information

Item Value
gene id G39516
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17510870 ~ 17512831 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU53019
aaGAAGACATAAGTTcatattttatacatttcaGATAATTTTCAGAAAGGCACTTAATCAAATACTCGACGCAAATTAGCAACAAGATTGAGGAAATTTCTATTTGGTAAAAGgcacattttttaaaagcaacaagACATATGAAGGCCATACACAAAAACAATCATGAACGAAATATGTTCAAACTTTGAATGACAGACAAAAAATGGCCAATCGGGACTTTTTTCCCAACACCATGATTACAAAAATCTGGGTATTTTTTTAAGGAAGGCTTAAGAGGTTTAACGTAAAACTAATCAAATATCAATATAGCTTTGCAAGATCTCTTGGAAATAATGCAACtgaaaaccaaacacacacacacacacacacactagttaaAGCTAAAGAAAACATTGATACTGTAATGGGTAAACTAACTTTCCCCAAATGGTAAAAACAACTATGAGATGAGTGGTGCTGGTGTAATGAGATAGCAGTATGATGGGAGCACGATGTTGTAAATCACAATCAAATCTGATTCTGGACAGACTAACAGTGACTAGGAATAgataatagaaataaaataagggAACATTTGATTTTAGGCAATGGATAGACGTTTTCATCTGGCTATTGTAATGAGAATCTGTCCTTTCAACCATCACCATCCACATTTGTCTTGAGGAGAGCACATTCTCCAACAATGATGATTTAGGAGTCTCTCCTGGCTTCTAAAATCAAACAAAGATCCCACTTCAAAAGCAGAGTGTGACACAAATAtaagattataaaaaaatatgtacatGTTTACGGTTTGTTTCTCCAGAGTGTGTGGTCTCTGCGGGCTATAGTTTATGTGAACATATTCTTTAAGTGCAGCCAGAACAAATGAGCCAGTCAAGTTTGCCAACAGTTCCTCTCTTTTAGTTTCTTTTTGCCACAATCATCCGGTCCATGGAATGTATGGAACCTGAGTATTTCTCACCACTCAACTAAACTGCACCCATCCTGATTTGACAGCATCTTTACTGGAGTGGAGCCTGCAGATGTGAAATCTCCCCACATGTCGGAGCTGGGTGGGGTTGCAGGGCCAGGGGACCCAAAGTCAAAAAGAGAGGCTGGATCTGGAGAATAACAATTATTGAAAGCATGAATACAGTTTAAATCATGTGAagatgttttacattttttttaatttttatttgatACAATAGCACGGGGATCACCAGTGTTAGCCTGTACAGCTGAGACTGTCTGCTCTCCCAGAGTGGGCGGTATGACACCTCCAACCTTCACGCCTGGTGGAGGTGGGAGTAGACCCCCACCCATTGGCCGGGGTTTGGCTCCACCTGCATCCTTCTTCTTGATGTTCTGTGATTGACAGAGTCATGAGAATATCTGAATATCTTTATGGTTTAATTAGTGGCTCTTTTCTTCATAGAATCTGTCAACGTTCAATGTAGTATTTATTCCTTTCAGTAATTCCTTTACATCGGTGATGTTGGAGTGACTCACCCCAATGCTGATCTTGATAGTCTGTCCCTCTTTGAAGCGAAGGTCCAGCTTAGGTGCTGTGCTCTCAGAAGCTTCCTGTTTTGCGAGCTCACCTTCTTGCTTTACCCACCTTTAGAAACAGTTTGAAAgcataataattattattaaaataatgttaatAGAGTGGGTCATTGCAGTAGCAAGATACagatgacaaaaacatcagtatTGTAAACACAACCATCTACAAAGGTTTCGTGTGTGGACTTGTTTTACACTCATTTAAGATGAAAAATTATTGATATGCACAATGGACAAATG

Function

GO: NA

KEGG:

id description
ko03020 RNA polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
TU53019 True 1797 lncRNA 0.38 2 17510870 17512831

Neighbor

gene id symbol gene type direction distance location
mfap2 mfap2 coding upstream 23993 17480859 ~ 17486877 (+)
sdhb LOC106929635,LOC103130297,LOC107085616,LOC105927147,LOC103465156,LOC103357925 coding upstream 30778 17473313 ~ 17480092 (+)
LOC120557636 NA coding upstream 48148 17458924 ~ 17462722 (+)
ssu72 ssu72 coding upstream 52879 17452822 ~ 17457991 (+)
fndc10 NA coding upstream 58813 17449728 ~ 17452057 (+)
fbxo42 fbxo42 coding downstream 12184 17525015 ~ 17531451 (+)
slc25a34 slc25a34,LOC104928013 coding downstream 20234 17533065 ~ 17542138 (+)
LOC120557614 NA coding downstream 29377 17542208 ~ 17545551 (+)
fblim1 LOC104949010 coding downstream 36692 17549523 ~ 17555364 (+)
si:ch1073-335m2.2 LOC104949008,LOC103357917 coding downstream 45089 17557920 ~ 17578916 (+)
G39509 NA non-coding upstream 9646 17500063 ~ 17501224 (+)
G39489 NA non-coding upstream 44274 17466087 ~ 17466596 (+)
G39484 NA non-coding upstream 46092 17463538 ~ 17464778 (+)
G39486 NA non-coding upstream 48620 17461864 ~ 17462250 (+)
G39434 NA non-coding upstream 115048 17351706 ~ 17395822 (+)
G39522 NA non-coding downstream 18691 17531522 ~ 17531924 (+)
G39533 NA non-coding downstream 76879 17589710 ~ 17590985 (+)
G39579 NA non-coding downstream 92992 17605823 ~ 17606816 (+)
G39580 LOC103357913,LOC102778940 non-coding downstream 94134 17606965 ~ 17607514 (+)
G39588 rhoaa,LOC106583462,LOC103374076,LOC105900164,LOC107679616,LOC105026930,LOC107591788,LOC108265880 non-coding downstream 107892 17620723 ~ 17622507 (+)
LOC120557637 minos1,LOC103357934 other upstream 133310 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 312653 17193151 ~ 17198217 (+)
G39351 NA other upstream 390980 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 464174 16964617 ~ 17046696 (+)
G39116 NA other upstream 967290 16517536 ~ 16543580 (+)
G39581 LOC104949003,LOC103357913 other downstream 95099 17607930 ~ 17609216 (+)
LOC120556838 NA other downstream 207610 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 391867 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 676751 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 702875 18215706 ~ 18226578 (+)

Expression


Co-expression Network