G39580 (LOC103357913,LOC102778940)


Basic Information

Item Value
gene id G39580
gene name LOC103357913,LOC102778940
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17606965 ~ 17607514 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU53106
GCTCAAGAAGCTCCAGGCCTGGCTGAACTTCTTTCTCTGGGTCGCTGGTTTCTGCAGTCGTGCTCACTGTGGCAATGTACATCCCGTCTGAGGCCACATTGTGGGCATAGGACACTACGGATATGTAAATGTCAGATTTCCTGTTGATTTGCGTTTGAGGGATGATGATTTGACAGGAGTTGGCCTCGTGGGTGTTTTTAACTGGGTGATTTAATAAACAGATGACTCTTATCACACGCCCCACTTTCCTCACTCGATTAGGAACGTAGCTGGGGTCGCAGATGAGCTGTTTACAGTGAAAAAGCTTCCCCTCAGATTTTACAGCTTTCACTTTGCCGTTGTCCATCACAACCTCATCCACTG

Function

NR:

description
PREDICTED: rab GDP dissociation inhibitor beta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53106 True 363 lncRNA 0.48 3 17606965 17607514

Neighbor

gene id symbol gene type direction distance location
ndufaf3 ndufaf3 coding upstream 1871 17602657 ~ 17605094 (+)
si:ch1073-335m2.2 LOC104949008,LOC103357917 coding upstream 28049 17557920 ~ 17578916 (+)
fblim1 LOC104949010 coding upstream 51601 17549523 ~ 17555364 (+)
LOC120557614 NA coding upstream 61414 17542208 ~ 17545551 (+)
slc25a34 slc25a34,LOC104928013 coding upstream 64827 17533065 ~ 17542138 (+)
LOC120557609 tmem43 coding downstream 2802 17610316 ~ 17617948 (+)
LOC120557612 NA coding downstream 33132 17640646 ~ 17644905 (+)
LOC120557598 NA coding downstream 47109 17654623 ~ 17658625 (+)
tmcc1b LOC103357903,LOC102207997,LOC101484470,LOC100708690,LOC102775589 coding downstream 55747 17663261 ~ 17680433 (+)
LOC120557621 NA coding downstream 73725 17681239 ~ 17684221 (+)
G39579 NA non-coding upstream 149 17605823 ~ 17606816 (+)
G39533 NA non-coding upstream 15980 17589710 ~ 17590985 (+)
G39522 NA non-coding upstream 75041 17531522 ~ 17531924 (+)
G39516 NA non-coding upstream 94134 17510870 ~ 17512831 (+)
G39509 NA non-coding upstream 105741 17500063 ~ 17501224 (+)
G39588 rhoaa,LOC106583462,LOC103374076,LOC105900164,LOC107679616,LOC105026930,LOC107591788,LOC108265880 non-coding downstream 13209 17620723 ~ 17622507 (+)
G39626 LOC103357902 non-coding downstream 77480 17684994 ~ 17686581 (+)
G39630 NA non-coding downstream 82290 17689804 ~ 17690576 (+)
G39633 NA non-coding downstream 107898 17715412 ~ 17722348 (+)
G39638 NA non-coding downstream 127972 17735486 ~ 17735906 (+)
LOC120557637 minos1,LOC103357934 other upstream 229405 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 408748 17193151 ~ 17198217 (+)
G39351 NA other upstream 487075 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 560269 16964617 ~ 17046696 (+)
G39116 NA other upstream 1063385 16517536 ~ 16543580 (+)
G39581 LOC104949003,LOC103357913 other downstream 416 17607930 ~ 17609216 (+)
LOC120556838 NA other downstream 112927 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 297184 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 582068 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 608192 18215706 ~ 18226578 (+)

Expression


Co-expression Network