G39588 (rhoaa,LOC106583462,LOC103374076,LOC105900164,LOC107679616,LOC105026930,LOC107591788,LOC108265880)


Basic Information

Item Value
gene id G39588
gene name rhoaa,LOC106583462,LOC103374076,LOC105900164,LOC107679616,LOC105026930,LOC107591788,LOC108265880
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 17620723 ~ 17622507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU53120
CAAGACTGTCAGGGCTGTCGATGGAGAAGCACATGAGAATGACATCAGTGTCTGGATAGGAGAGTGGGCGCAGTCTGTCGTAGTCTTCTTGACCTGCTGTATCCCAGAGTGCTAACTCGACCTGTTTGCTATCAACTTCAATGTCAGCAACGTAGTTCTCAAACACTGTGGGCACATAGACCTCTGGAAACTGGTCCTTACTGAACACAATGAGCAGACAGGTCTTCCCACAGGCTCCATCTCCCACTATGACCAGCTTTTTCCTGATTGCTGCCATAGCTGCAGACAGGGGACAGAAAACaaccaaggttacaacattttatgtaaaaaaacagGGAGGTCAAATTTATTGCATTCAGGCATTGTGCAATTTCTACCTCTACGCATGTGAGAAACGATGAGCAACCACTAACCTTCAGCTGTTTTGACACAACGCCCGTCTGAAACCAACACTCGAGGCTAACTATTTAGCTTTCTGTGGCAATATCACGGCTGTTTATAGCCAGTCAGTCAGCTATACCGTAGGTTTTATTCAATGGAGGACACGTGGACAGCATACAAAGTTGGGAGCTCATGTCACCTATGTTGATTTAGGAACTCGCTTCCATGATGATACATTTCCGCTCTAGTATTTCTGACCCACCCCAGGATTCAGATTGATACATTTCTACGTTATACGTTTGTCCTACATCACCATTAAAGCATTGCGTTAATTAACCTAAGATGTAACGTGTTGCTGCTCGCTGGCACCAATATATAATTGTGAATCATTGTAGTGCAGGCTGACCTAGATTTCAGTTAGCTAGGAGGTTCTGTTTACAAAAGACGTGCTAGCTGCTGTAGCTAaccagctagcgttagccggaTATGTGGCTAGTGCGCTACGTTAACACCTTTTTGATATTATTAACGGTGCAGGATACATGTACGATATTTATGATAAAATGTATCTAATGTCACGGCAGTGTTTGTGGTTCCAACGACTCAGTCAAACCTCGCTTTTCCTTTGAGTCACAAACCGGTACAGTTAGCTAGCGAGCTACCcaggcttagcttagcataacggAAGTCAAAGCGACTTTATCAgtccgttagctagctagctggctagcGTCAGCAGAATATCGGATGAAAATGTAGGTTAACAAAATGTATAACGATATTATTGACAATAAAACATACTGACAAGGTAGTGAATCTCAACGTTGCTTGTAAATATAACATGCTTACCTAGCGATTGGGTTAAAATC

Function

symbol description
rhoaa Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including cytoskeleton organization; skeletal muscle satellite cell migration; and wound healing, spreading of cells. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be located in membrane. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and neuron projection. Human ortholog(s) of this gene implicated in breast carcinoma. Orthologous to human RHOA (ras homolog family member A).

NR:

description
Transforming protein RhoA precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53120 True 1250 lncRNA 0.43 2 17620723 17622507

Neighbor

gene id symbol gene type direction distance location
LOC120557609 tmem43 coding upstream 2775 17610316 ~ 17617948 (+)
ndufaf3 ndufaf3 coding upstream 15629 17602657 ~ 17605094 (+)
si:ch1073-335m2.2 LOC104949008,LOC103357917 coding upstream 41807 17557920 ~ 17578916 (+)
fblim1 LOC104949010 coding upstream 65359 17549523 ~ 17555364 (+)
LOC120557614 NA coding upstream 75172 17542208 ~ 17545551 (+)
LOC120557612 NA coding downstream 18139 17640646 ~ 17644905 (+)
LOC120557598 NA coding downstream 32116 17654623 ~ 17658625 (+)
tmcc1b LOC103357903,LOC102207997,LOC101484470,LOC100708690,LOC102775589 coding downstream 40754 17663261 ~ 17680433 (+)
LOC120557621 NA coding downstream 58732 17681239 ~ 17684221 (+)
LOC120556839 NA coding downstream 68116 17690623 ~ 17698228 (+)
G39580 LOC103357913,LOC102778940 non-coding upstream 13209 17606965 ~ 17607514 (+)
G39579 NA non-coding upstream 13907 17605823 ~ 17606816 (+)
G39533 NA non-coding upstream 29738 17589710 ~ 17590985 (+)
G39522 NA non-coding upstream 88799 17531522 ~ 17531924 (+)
G39516 NA non-coding upstream 107892 17510870 ~ 17512831 (+)
G39626 LOC103357902 non-coding downstream 62487 17684994 ~ 17686581 (+)
G39630 NA non-coding downstream 67297 17689804 ~ 17690576 (+)
G39633 NA non-coding downstream 92905 17715412 ~ 17722348 (+)
G39638 NA non-coding downstream 112979 17735486 ~ 17735906 (+)
G39654 NA non-coding downstream 162752 17785259 ~ 17785810 (+)
G39581 LOC104949003,LOC103357913 other upstream 11507 17607930 ~ 17609216 (+)
LOC120557637 minos1,LOC103357934 other upstream 243163 17371483 ~ 17377560 (+)
srsf3b srsf3,LOC104948713,LOC103465186,LOC102226051,LOC103150674 other upstream 422506 17193151 ~ 17198217 (+)
G39351 NA other upstream 500833 17112113 ~ 17119890 (+)
LOC120556687 LOC103362900,LOC104950925,LOC102306361,LOC100693144,LOC103362894 other upstream 574027 16964617 ~ 17046696 (+)
LOC120556838 NA other downstream 97934 17720441 ~ 17734011 (+)
wnk2 wnk2,LOC104946158 other downstream 282191 17904698 ~ 17930118 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other downstream 567075 18189582 ~ 18194911 (+)
LOC120557740 acy1 other downstream 593199 18215706 ~ 18226578 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 1673752 19296259 ~ 19314826 (+)

Expression


Co-expression Network