G40139


Basic Information

Item Value
gene id G40139
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 19245773 ~ 19248346 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU53974
CAggagtacatttttttttaatgcatgtaTTACCTAGTTTATCccatattttttgtctttttcatatTGCTTGCTTTCATAATACATTACAATTATGCTACTGGTAGACCAGTAAAACACTTAATTACAAGAAAAGAGACTCGTTGTGTTACACATTCATCATGGCAGAAAATAGTGTCACATTTTACGTGTTTTGAATGTCATTAAATCCTGCATATGAGTCACAGTTAATTGACTCAATagctcattcactcactcactcacatgttcttgcacacacagacacaaaagctGTGCAAGATAACCTCCACAGCATATGCATTTCATTACAGTTGAATCCCTCAGCGTGTTTAGTCCAGAGTCCGTTCATCATATCCATGAATCTGCAGTGTCTCCCCTTAAGACACAGAGGACACTTCTGTCTTGCTGGCAGAGACTGAAGTCTCATCCTCCACCGAGCCACCCATTCCAACAGAGCTCAGCATGCAGTTACGGAACTGTTTGTTCATCAGCACGTAGATAACAGGGTTGTACAATGCTGAGCTCTTTGCAAAGAAGGCGGGTATAGCTGCTGTCAGGGGGGAGAAGTAAGCTCCCTTGTTCAGGAAGATCCAACCGGCGAAAGAGGCATATGGCACCCAGGCTACTAGGAAGCCCATAACCATCAAGAAGCACATGCGTGTTACTTCCCTCTCTGCCTTCTGGGTGGACTCTGACTCCTGCTGCTTGGCGGCGGCCTAagCTTTGACTGTCAGGACAAGGCATCCATAACTGAAGAAAATTATGAAGACGGGAGTGAAGAAGTGGACAGTAAACATGTAGATGACATATGATTCATTGTTGTAGCCTGGAGCCAGAGTGTAGTAGTCAGGTCCACAGGAGCACTGCATGCCCTCAGGAATGTACCTGGACCAGCCAAACAGTGGGGGTCCAGCGCATGCAAAAGCCATGATCCAGGTGAAAAGCACTCCAGCTCCTGCATGAGTTCCACTGAACTTGAAGCTTCCCATGGGTTTGCAGACGACAATGTATCTCTCAACAGCCAGGACTACAAGGGACCATAGAGCAACTTCACCTCCAAGTGTGGCCATGAATCCCTCAACAGCACAGGAAGTGGCTCCGAGAATGAAGTAGCCACTGAAAGCAGATATGATGGTGATAGTGAATCCGAACATGCACATGATCAGTCCAGCCACAGCAAGGTTGACCAGGATGTAGTTGAGAGGTTGCCGGAGCTTCTTGTTTGTAGCCGTTACATACAATGTCAGAACATTGATGGGAGTTCCAGTGCAGATCAAGAAGAACATGTAGAAAGCTAGAAGCTTGAACATGATGGGATCTACCATATAATACTGTTGGTATTCAAAAGGACTTCTAACAACCCCAGTCTTATTGGACATAGGGATGTAGAAGTTCTTGCCTTCTGTGCCATTGGGCTGGAATCCTCCGTCCCAAACCATTTTCAGTTACCTTCTTTGCTCAGGCTTCAATTGATGGACAGTAGAAATAGTGTGCACAGTCACACAGTAGTCACTAGTGGTGTAAGCCCACTCCCACAGCTTATGCTGTCCAGTTGATCTGTTTAATACCTTCC
>TU53976
CAggagtacatttttttttaatgcatgtaTTACCTAGTTTATCccatattttttgtctttttcatatTGCTTGCTTTCATAATACATTACAATTATGCTACTGGTAGACCAGTAAAACACTTAATTACAAGAAAAGAGACTCGTTGTGTTACACATTCATCATGGCAGAAAATAGTGTCACATTTTACGTGTTTTGAATGTCATTAAATCCTGCATATGAGTCACAGTTAATTGACTCAATagctcattcactcactcactcacatgttcttgcacacacagacacaaaagctGTGCAAGATAACCTCCACAGCATATGCATTTCATTACAGTTGAATCCCTCAGCGTGTTTAGTCCAGAGTCCGTTCATCATATCCATGAATCTGCAGTGTCTCCCCTTAAGACACAGAGGACACTTCTGTCTTGCTGGCAGAGACTGAAGTCTCATCCTCCACCGAGCCACCCATTCCAACAGAGCTCAGCATGCAGTTACGGAACTGTTTGTTCATCAGCACGTAGATAACAGGGTTGTACAATGCTGAGCTCTTTGCAAAGAAGGCGGGTATAGCTGCTGTCAGGGGGGAGAAGTAAGCTCCCTTGTTCAGGAAGATCCAACCGGCGAAAGAGGCATATGGCACCCAGGCTACTAGGAAGCCCATAACCATCAAGAAGCACATGCGTGTTACTTCCCTCTCTGCCTTCTGGGTGGACTCTGACTCCTGCTGCTTGGCGGCGGCAGCTTTGACTGTCAGGACAAGGCATCCATAACTGAAGAAAATTATGAAGACGGGAGTGAAGAAGTGGACAGTAAACATGTAGATGACATATGATTCATTGTTGTAGCCTGGAGCCAGAGTGTAGTAGTCAGGTCCACAGGAGCACTGCATGCCCTCAGGAATGTACCTGGACCAGCCAAACAGTGGGGGTCCAGCGCATGCAAAAGCCATGATCCAGGTGAAAAGCACTCCAGCTCCTGCATGAGTTCCACTGAACTTGAAGCTTCCCATGGGTTTGCAGACGACAATGTATCTCTCAACAGCCAGGACTACAAGGGACCATAGAGCAACTTCACCTCAAGTGTGGCCATGAATCCCTCAACAGCACAGGAAGTGGCTCCGAGAATGAAGTAGCCACTGAAAGCAGATATGATGGTGATAGTGAATCCGAACATGCACATGATCAGTCCAGCCACAGCAAGGTTGACCAGGATGTAGTTGAGAGGTTGCCGGAGCTTCTTGTTTGTAGCCGTTACATACAATGTCAGAACATTGATGGGAGTTCCAGTGCAGATCAAGAAGAACATGTAGAAAGCTAGAAGCTTGAACATGATGGGATCTACCATATAATACTGTTGGTATTCAAAAGGACTTCTAACAACCCCAGTCTTATTGGACATAGGGATGTAGAAGTTCTTGCCTTCTGTGCCATTGGGCTGGAATCCTCCGTCCCAAACCATTTTCAGTTACCTTCTTTGCTCAGGCTTCAATTGATGGACAGTAGAAATAGTGTGCACAGTCACACAGTAGTCACTAGTGGTGTAAGCCCACTCCCACAGCTTATGCTGTCCAGTTGATCTGTTTAATACCTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU53974 True 1594 lncRNA 0.45 6 19245773 19248346
TU53976 False 1590 lncRNA 0.45 6 19245773 19248346

Neighbor

gene id symbol gene type direction distance location
LOC120556929 LOC104920520,LOC103360254 coding upstream 20554 19186425 ~ 19225219 (+)
si:dkey-7k24.5 LOC103360585 coding upstream 109287 19130277 ~ 19136486 (+)
stau1 stau1 coding upstream 122367 19109380 ~ 19123406 (+)
pbrm1l LOC103360180,LOC102204824,LOC102785351,LOC101477452 coding upstream 136543 19096113 ~ 19109230 (+)
LOC120556926 fam107a coding upstream 175799 19063609 ~ 19069974 (+)
rrp9 NA coding downstream 86188 19334534 ~ 19342023 (+)
LOC120557156 LOC104965620,LOC101472531,LOC100534483,LOC103360354 coding downstream 173714 19422060 ~ 19423856 (+)
rbm5 NA coding downstream 178927 19427273 ~ 19437025 (+)
gnai2b LOC108231398,LOC103360398,LOC100707363 coding downstream 225042 19473388 ~ 19528747 (+)
inka1b LOC103360405,LOC104965615 coding downstream 283991 19532337 ~ 19534915 (+)
G40109 NA non-coding upstream 66836 19173149 ~ 19178937 (+)
G40104 LOC102787023,LOC103360233,LOC102206431,LOC101476705 non-coding upstream 76382 19168836 ~ 19169391 (+)
G40073 NA non-coding upstream 168736 19075740 ~ 19077037 (+)
G40064 NA non-coding upstream 187195 19054128 ~ 19058578 (+)
G40049 NA non-coding upstream 257089 18988444 ~ 18988684 (+)
G40182 NA non-coding downstream 126284 19374630 ~ 19374839 (+)
G40284 NA non-coding downstream 512827 19761173 ~ 19762498 (+)
G40339 NA non-coding downstream 819932 20068278 ~ 20121870 (+)
G40352 NA non-coding downstream 898389 20146735 ~ 20146983 (+)
G40357 NA non-coding downstream 908508 20156854 ~ 20157525 (+)
LOC120557740 acy1 other upstream 1019195 18215706 ~ 18226578 (+)
tusc2b LOC104925135,LOC103359746,LOC102226579,LOC103137991 other upstream 1050862 18189582 ~ 18194911 (+)
wnk2 wnk2,LOC104946158 other upstream 1315655 17904698 ~ 17930118 (+)
LOC120556838 NA other upstream 1511762 17720441 ~ 17734011 (+)
G39581 LOC104949003,LOC103357913 other upstream 1636557 17607930 ~ 17609216 (+)
oxtrl LOC104920519,LOC103360274,LOC100702815,LOC102207462,LOC102295060 other downstream 47913 19296259 ~ 19314826 (+)
G40164 LOC103360294,LOC104965627,LOC100702547 other downstream 76483 19324829 ~ 19326625 (+)
brk1 brk1,BRK1,LOC106565571 other downstream 176520 19424866 ~ 19426456 (+)
slc38a3b LOC103360384 other downstream 193662 19442008 ~ 19470998 (+)
LOC120557344 LOC104966310 other downstream 368835 19617181 ~ 19632519 (+)

Expression


Co-expression Network