XLOC_005088 (CABZ01069040.1)


Basic Information

Item Value
gene id XLOC_005088
gene name CABZ01069040.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3652015 ~ 3705862 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009886
ATGTCTCATGCTGAAGTAGAGTTCGCCGGACGCGCTTTCCCAGCTTTACCTGTTGAATTAGAGGACGACTGTCTCTCCAGAGTGCCAATGCTGCGCACACACTCCTTAAGCGCAAGGAGAAACTCATACGTGCTCCATAAACTCGACCCTCAGATATACAATGAGACGCTCTCCAAAGGTTTATCGTGGTCTGCAGAAAACATACTGCTGTCTGCAGACTCCAAAACAGACCCTTCGCCTCCAATGTCTCCATCTCCAGTGTCCAGCCCGGAGTCTGTAACACCCAATGCGGATTCAGCAGCTCCGGAGGACTGGAGAAGCCCCGTCCAGCAGCCTCGGTCTCCTCAGGATGCTAGTTCTGATTCGGATAATGAGGGAACAAAAGGGGAGAACGCAGTCCGACGGCGGCAGTTTTTAAGCAGGCTGGAGCAGGATGAGAAAGAGGACATCGAGACCAAAGCTGTGGCTACATCACCTGATGGACGATATCTGAAGTTTAATATTGAAATCGGGAGGGGGTCTTTTAAGACGGTCTACAAGGGACTGGACACCGAGACTACAGTGGAGGTGGCATGGTGCGAGTTACAGACTCGCAAACTGAGCAAAGTGGAGCGTCAGCGCTTCAGCGAAGAGGTCGAGATGCTCAAGGGTCTCCAGCATCCAAACATCGTGCGCTTTTACGACTCCTGGAAGTCCAACGTCAAAGGCCAGAAGTGCATCCTGCTGGTCACTGAGCTCATGACTTCTGGCACTCTCAAAACGTATCTGAAGCGTTTTAAGGAGATGAAGCTGAAGCTCCTGCAGCGGTGGAGCCGGCAGATCCTCAAGGGGCTTCACTTCCTGCACACACGCTCTCCTCCCATCATACACCGGGACCTGAAGTGCGACAACATCTTCATCACGGGGCCCACAGGAAGTGTGAAGATCGGGGACCTGGGACTGGCCACTCTCAAGAGGGCCAGCTTTGCTAAAAGCGTCATAGGAACTCCTGAATTCATGGCTCCTGAAATGTATGAGGAGAAATACGACGAGGCGGTGGACGTTTATGCATTTGGCATGTGTATCTTGGAGATGACCACATCCGAATACCCATATTCAGAGTGCCAAAACGCTGCCCAGATTTACCGCAAAGTTACCAGTGTAAGTTTCAACCTGCTTACTTGCTTGGATAACATTAAAGGGGAAGTTCATTCAAAAaaagcatgtgctgtcatggctttgcaatcaaaaaaatgtcattataatggaagtcaatggggcaaaaacagccaccagaGAGTGCCCAGagagtattgtttttttgtttttggtaatttttcccaaaaaaaagtattttaccaaaaaatgtgtcaaattaaGATTTTTCACCTGAAatcatcccatttgctgaaacCCAGATAA
>TCONS_00009887
ATGTCTCATGCTGAAGTAGAGTTCGCCGGACGCGCTTTCCCAGCTTTACCTGTTGAATTAGAGGACGACTGTCTCTCCAGAGTGCCAATGCTGCGCACACACTCCTTAAGCGCAAGGAGAAACTCATACGTGCTCCATAAACTCGACCCTCAGATATACAATGAGACGCTCTCCAAAGGTTTATCGTGGTCTGCAGAAAACATACTGCTGTCTGCAGACTCCAAAACAGACCCTTCGCCTCCAATGTCTCCATCTCCAGTGTCCAGCCCGGAGTCTGTAACACCCAATGCGGATTCAGCAGCTCCGGAGGACTGGAGAAGCCCCGTCCAGCAGCCTCGGTCTCCTCAGGATGCTAGTTCTGATTCGGATAATGAGGGAACAAAAGGGGAGAACGCAGTCCGACGGCGGCAGTTTTTAAGCAGGCTGGAGCAGGATGAGAAAGAGGACATCGAGACCAAAGCTGTGGCTACATCACCTGATGGACGATATCTGAAGTTTAATATTGAAATCGGGAGGGGGTCTTTTAAGACGGTCTACAAGGGACTGGACACCGAGACTACAGTGGAGGTGGCATGGTGCGAGTTACAGACTCGCAAACTGAGCAAAGTGGAGCGTCAGCGCTTCAGCGAAGAGGTCGAGATGCTCAAGGGTCTCCAGCATCCAAACATCGTGCGCTTTTACGACTCCTGGAAGTCCAACGTCAAAGGCCAGAAGTGCATCCTGCTGGTCACTGAGCTCATGACTTCTGGCACTCTCAAAACGTATCTGAAGCGTTTTAAGGAGATGAAGCTGAAGCTCCTGCAGCGGTGGAGCCGGCAGATCCTCAAGGGGCTTCACTTCCTGCACACACGCTCTCCTCCCATCATACACCGGGACCTGAAGTGCGACAACATCTTCATCACGGGGCCCACAGGAAGTGTGAAGATCGGGGACCTGGGACTGGCCACTCTCAAGAGGGCCAGCTTTGCTAAAAGCGTCATAGGAACTCCTGAATTCATGGCTCCTGAAATGTATGAGGAGAAATACGACGAGGCGGTGGACGTTTATGCATTTGGCATGTGTATCTTGGAGATGACCACATCCGAATACCCATATTCAGAGTGCCAAAACGCTGCCCAGATTTACCGCAAAGTTACCAGTGTAAGTTTCAACCTGCTTACTTGCTTGGATAACATTAAAGGGGAAggaaaccaccaacaataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000111945

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009886 False 1401 mRNA 0.49 5 3652015 3705862
TCONS_00009887 True 1203 mRNA 0.51 5 3652221 3705862

Neighbor

gene id symbol gene type direction distance location
XLOC_005087 NA coding downstream 81934 3569747 ~ 3570081 (-)
XLOC_005086 NA coding downstream 107999 3519168 ~ 3544016 (-)
XLOC_005085 TANC2 coding downstream 198426 3314504 ~ 3453589 (-)
XLOC_005084 lsm12b coding downstream 352866 3287783 ~ 3299149 (-)
XLOC_005083 NA coding downstream 367106 3281756 ~ 3284909 (-)
XLOC_005089 vps25 coding upstream 8214 3714076 ~ 3721957 (-)
XLOC_005090 tlcd3bb coding upstream 34743 3740605 ~ 3756405 (-)
XLOC_005091 MAZ coding upstream 60695 3766557 ~ 3778848 (-)
XLOC_005092 NA coding upstream 76759 3782621 ~ 3786382 (-)
XLOC_005093 taok2b coding upstream 83252 3789114 ~ 3840664 (-)
XLOC_005073 NA non-coding downstream 907374 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 982515 2625669 ~ 2669500 (-)
XLOC_005094 NA non-coding upstream 154602 3860464 ~ 3865234 (-)
XLOC_005102 NA non-coding upstream 383875 4089737 ~ 4129820 (-)
XLOC_005103 NA non-coding upstream 437732 4143594 ~ 4169699 (-)
XLOC_005105 NA non-coding upstream 484160 4190022 ~ 4194304 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04222867_04253291 NA coding CI01000047 null 4222682 ~ 4253711 (+)