G40652


Basic Information

Item Value
gene id G40652
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 20939706 ~ 21004960 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU54702
AGAGGGGGGAGGGGTCTGTTTACCcaaatacaaacaacacactttAAACTACTATAGCTGTGTAGCCATGAAAATAATTTCAGTTTGATGTGCAGAGGCTTTAGACACCACCCAAACACAATGGAGATTTGTTTGAGTGAGTCAAAGTTGTGAAAAATTACTTTGAAAACTCATCAACAATGTGTCTTCCCAAAAACAAAGTATTTGTTACTCTACAATCCACAAACATCACTGTCAGCAGTTTTCATTGGGGCTATTTTGTTGGCAGAAAGTAGTTTGAGTGACCTATTAAGAGACACGACAGATTATTGTCTCTGTCCTTGATCTTCAACCTGAGTTGTCCACCTTGTCATTGTTGCATTCATGATAGTTCACATATCCAGTCTTAATTTACAGGACAGCCAGTTTGTGATATTTTTCACCTCAGAAAGCAGCCTTGTGCTGCCTTATTGCTGTATGTAGTGAAGATTTAAATTCAAACATGGAATAATCTGGCTTTGTAGTAATTTGGGTGCTTTGAAATAATCTAAAGGGATTATCCTTCGCAAACAGTATCTCTGATTAACAGCACCAAATTCTTATTTTAATCCTCCCAAGAATAGCCTAGTTTTGCCATTATGTTTGGGAAAATGCATCAGTgtctcacaaaaaaaagaaaaaaggcaagaaacagattcagcaggtcTTAGTGTTTTCCCTATCTAGTGCCTCAGCAGTTATTGTCTACATGCTTTATTATTCTGGGGGTCTTTCAACCTCAATCTGTTTGCCTTGTTGTTTTAGGATTGGAGGCCAGAAAAAGTTGATCTTTGACACAGAAGTTTGACCAACTCTGACATTGATCATCAGCGCTTCCATTAATCAGACCACAGTTTGACAGAAGGGACGAATCTGTTGGACACGTGCAAATGTTTGTGACGGCATGTCACACAGCTTAGTATGTGTTGCACAGGTGGTAATCCTGACACCTTCCACTGCAAAGCAGCGCAGAGAAGCttatattacacacatacacaggagaAGAACAAATTCCACACATTGCACATCAGAAATGAAAAAGCTTTCATGTGAAGTCCTTGGTTCTGGCTTACTGCGATTCCTTAATCAGTCAGACTTGGAGAACGTGAAGTGGTGCTGGTTGCTGTACAGTCGGCTGCTGTAATGTCGATTCTGTTTTCGAGCGTGGAAGTTTGTAAGCTGTGCTCACAATCTGCTCATGCACAACATATGGCAGTCGGCTGTTTGTTTGGCATGTTTGTCCTGGCATAGCCCTACAAAACAGAACTACCATAAAACAAACATTCAGCACATACAGATATTTAGATATTCATTGTGAATCCTAGCCAGCATATCCATCCCAATATGCAAGCTAGTGTTTctcagaaatataaataacaatgtgtaattgcacaaataaacatgttCTGCTTATCCCGTGTAGCTGCTGTTATCAGCAAACACATATGGCGTCAAAGCACTTAAATGTATGCGAGTAATTGGCAGAACAGAATTTCCTTCTGCATTTTCTTTTAGGCTTAGACATTTCACACTGGGTGCATAGTAATTGCATGCTGTTGTGTGGAAACAGTGACAAATTGGAAGCATAATTACAGAGAAATATGAAAGTAATAAAATGTTGTAAATGCATGAATAATGCAGCATTATGTCACTAAGTCATCAACTCTGTGCTGGAAAAAAGACCTAATTCATGAATGGATGAAAAAGGTCAACCTGCTCAAGGCACACTGTATATTATGTTTGGGCTCTCAGATTACTCACATTTCAGAAGGGCAACACACAGTGCACTGTGTGGGTGTTTgccagatacacacacacacacatacacacacacacacacacacatgctataACACTattatgcacacaaacacacacatcattgcCTCCGGGGGAGTGTTGAGTGCTCGTTGTTTAAAAAGGTGTGGGTCCAGCTGGCAGGGTCTGAAACAGCTCGGAGTAGTTCAGCACCTTCTGTACTCTTGCTGCTTGTTGGCTCAGCAGATTACCAGTATTTTAATAAGTGACAAACgtgagaaacaaaataaataataaaaacacatgcatGACCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54702 True 2091 lncRNA 0.40 2 20939706 21004960

Neighbor

gene id symbol gene type direction distance location
park7 park7,LOC102794188 coding upstream 22313 20911176 ~ 20917393 (+)
pax7a pax7,LOC102793709,LOC103136430 coding upstream 51681 20842006 ~ 20888025 (+)
errfi1a errfi1,LOC104955287 coding upstream 154028 20778820 ~ 20785678 (+)
slc45a1 slc45a1 coding upstream 216813 20716388 ~ 20722893 (+)
mmel1 mmel1,LOC102790517 coding upstream 238782 20680988 ~ 20700924 (+)
LOC120558205 LOC104958589,LOC102311177,LOC101487453,LOC102794475,LOC100710698,LOC102293443 coding downstream 84351 21089311 ~ 21094393 (+)
LOC120556970 LOC104958589,LOC102311177,LOC101487453,LOC100710698,LOC102794475,LOC103464449 coding downstream 93450 21098410 ~ 21103446 (+)
iffo2b iffo2,LOC102796214 coding downstream 104065 21109025 ~ 21136018 (+)
LOC120557455 timp4 coding downstream 207972 21212932 ~ 21226021 (+)
tamm41 tamm41 coding downstream 280125 21285085 ~ 21293192 (+)
LOC120558155 NA non-coding upstream 171779 20766982 ~ 20767927 (+)
LOC120557890 NA non-coding upstream 207752 20726094 ~ 20731954 (+)
G40592 NA non-coding upstream 213756 20723222 ~ 20725950 (+)
G40488 NA non-coding upstream 408352 20491994 ~ 20531354 (+)
G40479 NA non-coding upstream 516210 20419140 ~ 20423496 (+)
G40698 NA non-coding downstream 131826 21136786 ~ 21137939 (+)
G40718 syn2 non-coding downstream 194237 21199197 ~ 21202881 (+)
G40724 NA non-coding downstream 338978 21343938 ~ 21375948 (+)
G40755 hrh1 non-coding downstream 410769 21415729 ~ 21418333 (+)
G40804 NA non-coding downstream 708837 21713797 ~ 21777596 (+)
G40353 rassf1,LOC102778369 other upstream 791016 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 1016157 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 1080365 19851548 ~ 19859341 (+)
sema3fa LOC103360486,LOC102793610,LOC100701195,LOC102213718,LOC102288772,LOC101468868 other upstream 1198317 19687671 ~ 19741389 (+)
LOC120557344 LOC104966310 other upstream 1307187 19617181 ~ 19632519 (+)
vgll4b vgll4 other downstream 290142 21295102 ~ 21343711 (+)
itga7 itga7 other downstream 945416 21950376 ~ 21992611 (+)
cbfa2t2 cbfa2t2 other downstream 2729988 23734948 ~ 23771932 (+)
znfx1 NA other downstream 2843087 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 3550565 24555525 ~ 24560318 (+)

Expression


Co-expression Network