G40842 (alas1)


Basic Information

Item Value
gene id G40842
gene name alas1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 21917243 ~ 21917811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU54965
CGACAAAGTATTTCATCATCTCAGGGTTGTGGTGAGGCGTTGGCGCGATACGCAGAAGCTCTTCTCCTTTGGCAACGGTAGGATAGTTGATGGCCTGCACGTAGATGTTGTGGCGACTCAGCATGAGGTCACACACTTCTGTGTTCTTCTCTGCGTCTGATACccGGACGGGGATGATGTGGCTGGGGCAGTGCACCACTGGCAGCCCCGAGTCCATCAGCATTTGTCTGAGCAGCTTGACGTTGCGCTGGTGTTTGCGTCTCAGTGCGCGGCCCTCTTCCCCTTTAAGAACCTGGATTGAGTTTCTGGCTCCTTGTAACAGCATTGGTGGCAGCGAGGTGGTGAAGATGAAACCAGCGGCGTAGGAACGCACCGTGTCCACCAGAGCAGCAGTGCTCGCGATGTAGCCGCCCACACAGCCGAAGGCCTTGCC

Function

symbol description
alas1 Predicted to enable 5-aminolevulinate synthase activity. Acts upstream of or within neutrophil differentiation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including EVL; digestive system; periderm; polster; and pronephros. Orthologous to human ALAS1 (5'-aminolevulinate synthase 1).

NR:

description
PREDICTED: 5-aminolevulinate synthase, nonspecific, mitochondrial isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU54965 True 433 lncRNA 0.57 2 21917243 21917811

Neighbor

gene id symbol gene type direction distance location
b9d2 b9d2 coding upstream 29064 21887158 ~ 21888179 (+)
tamm41 tamm41 coding upstream 624051 21285085 ~ 21293192 (+)
LOC120557455 timp4 coding upstream 691222 21212932 ~ 21226021 (+)
iffo2b iffo2,LOC102796214 coding upstream 781225 21109025 ~ 21136018 (+)
LOC120556970 LOC104958589,LOC102311177,LOC101487453,LOC100710698,LOC102794475,LOC103464449 coding upstream 813797 21098410 ~ 21103446 (+)
LOC120557365 NA coding downstream 8231 21926042 ~ 21939774 (+)
npffl npff coding downstream 79540 21997351 ~ 22000471 (+)
LOC120558047 ppp1r1a,LOC102206106,LOC102311133,LOC101483072 coding downstream 88729 22006540 ~ 22043893 (+)
col2a1b col2a1,LOC103356561,LOC107668081,LOC107585898 coding downstream 226560 22144371 ~ 22192386 (+)
LOC120557368 LOC103356557,LOC104967292 coding downstream 303487 22221298 ~ 22252681 (+)
G40804 NA non-coding upstream 139647 21713797 ~ 21777596 (+)
G40819 NA non-coding upstream 141826 21760799 ~ 21775417 (+)
G40755 hrh1 non-coding upstream 498910 21415729 ~ 21418333 (+)
G40724 NA non-coding upstream 541295 21343938 ~ 21375948 (+)
G40718 syn2 non-coding upstream 714362 21199197 ~ 21202881 (+)
G40904 NA non-coding downstream 284315 22202126 ~ 22202736 (+)
G40923 NA non-coding downstream 356263 22274074 ~ 22274301 (+)
LOC120557379 NA non-coding downstream 377143 22294954 ~ 22297812 (+)
G40948 NA non-coding downstream 471367 22389178 ~ 22425121 (+)
G41021 NA non-coding downstream 636806 22554617 ~ 22554845 (+)
vgll4b vgll4 other upstream 573532 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 1768553 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 1993694 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 2057902 19851548 ~ 19859341 (+)
sema3fa LOC103360486,LOC102793610,LOC100701195,LOC102213718,LOC102288772,LOC101468868 other upstream 2175854 19687671 ~ 19741389 (+)
itga7 itga7 other downstream 32565 21950376 ~ 21992611 (+)
cbfa2t2 cbfa2t2 other downstream 1817137 23734948 ~ 23771932 (+)
znfx1 NA other downstream 1930236 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 2637714 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 3290345 25208156 ~ 25310553 (+)

Expression


Co-expression Network