G41099 (ppp1r16b)


Basic Information

Item Value
gene id G41099
gene name ppp1r16b
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23011482 ~ 23018265 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU55313
CAGCGTGGCTCCCTGAGAATCCTGTTGGttgacctcctctccccgtgTCAGCAGTTCCTGAATGTCTCCCAGCATCCTTCTCTCTGTTGACGCTCGTGTCTCGTTGATCATCTCCTGGGTGATGCCTCTGTTGGCCATAGCCGTCTCGATGATGTCCAGTGTTGGGTCGTCTTCACACAGGTCGTATGGCATGTTCCCATCAGAGTTGACCGCCAGCAAATCTGCACCGTGTGAAATGAGTATCCTGACCAGTCCTGCGTGGCCACAGGTAGCAGCGGCGTGCAGAGGCGTCCACAGCTCGTTGTCC

Function

symbol description
ppp1r16b Predicted to enable myosin phosphatase regulator activity and protein phosphatase 1 binding activity. Predicted to be involved in establishment of endothelial barrier; regulation of protein dephosphorylation; and regulation of sprouting angiogenesis. Predicted to be active in plasma membrane. Orthologous to human PPP1R16B (protein phosphatase 1 regulatory subunit 16B).

NR:

description
PREDICTED: protein phosphatase 1 regulatory inhibitor subunit 16B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55313 True 307 lncRNA 0.57 3 23011482 23018265

Neighbor

gene id symbol gene type direction distance location
shmt2 LOC103359782,LOC102307393 coding upstream 75915 22909436 ~ 22935567 (+)
LOC120556810 nxph4,LOC103359783 coding upstream 105295 22860054 ~ 22906187 (+)
LOC120557968 stac3 coding upstream 241450 22761471 ~ 22770032 (+)
LOC120557262 r3hdm2 coding upstream 257969 22676522 ~ 22753513 (+)
arhgap9 arhgap9 coding upstream 456880 22507327 ~ 22554602 (+)
LOC120556778 arhgap40 coding downstream 88553 23106818 ~ 23126652 (+)
slc32a1 slc32a1,LOC102787607,LOC100693191 coding downstream 130810 23149075 ~ 23153670 (+)
LOC120557748 LOC103355891,LOC100710082 coding downstream 164184 23182449 ~ 23213859 (+)
ipo9 ipo9 coding downstream 216062 23234327 ~ 23254218 (+)
shisa4 shisa4,LOC102788956 coding downstream 238253 23256518 ~ 23265863 (+)
G41092 LOC104950336 non-coding upstream 47350 22958128 ~ 22964132 (+)
LOC120556826 NA non-coding upstream 187326 22776241 ~ 22824156 (+)
G41041 gli1 non-coding upstream 414967 22595427 ~ 22596515 (+)
G41040 NA non-coding upstream 418399 22591672 ~ 22593083 (+)
G41021 NA non-coding upstream 456637 22554617 ~ 22554845 (+)
G41112 NA non-coding downstream 141021 23159286 ~ 23161818 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding downstream 145264 23163529 ~ 23172306 (+)
G41118 NA non-coding downstream 195893 23214158 ~ 23215795 (+)
LOC120557222 NA non-coding downstream 213907 23232172 ~ 23232958 (+)
G41126 NA non-coding downstream 236677 23254942 ~ 23255527 (+)
itga7 itga7 other upstream 1018871 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1667771 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 2862792 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3087933 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3152141 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 716683 23734948 ~ 23771932 (+)
znfx1 NA other downstream 829782 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1537260 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 2189891 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2664142 25682407 ~ 25690935 (+)

Expression


Co-expression Network