G41220


Basic Information

Item Value
gene id G41220
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 23337333 ~ 23358085 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU55469
GTGTCATCACCTCACCCCCTTGCTTTGCTCTGCTAGGCTGCTGTAACACacctgaatatgaaaacaccTGCCGCTGATGGAGCTGACATGCTAACATGTTAGATAATGTAGCTTCAGGATTACGCTGTATGCTGCGATCAATGCTGCTGCTGACATTTAGATAGGCCTTCTTGTTTGTGCATCGACTCTTGCCATTTCAATCCTGAAATGGAGTTTTTCTTTACTGCCTGCTCTGGACCACCAAACTACCTGTTTCACCTCTCAAAGATGGAGCTGGTTTACTACTCTCCAGTGGGCACTGGATAAAAGTCCGTCACAGTGGAAAGAAAAGTGACAACCTTGGCATCGACACCCCTTGCTTTTCTAAACGACAGATTGCATCCCACATGGCCCTTTGCAGGGGGAGACTGCCTCGGCTTTTTAACCGGcatctgttctctgttctcctGTTTGATCCCCGGCATGGCGCGACACTTTTTCTATTATGTTACCAAACTGTGATACGGCAGCTATAACACAACATGTCCTCCTGGCATCAACGTCTACATCCCTAAAACCTCAAGTGCCACTTCACAGACGTGTGGCTAATTCGGAGAAGCCAATTCACAGAAGTCACAGAGCAGATCATGTTGCAAAACACGCAGCAAGGCTTTTCTGTGGGCCAGTGGctggattgaaaaaaaaaaaaaatatgagtcTGCTTTGAAGATGACTCCAAATGAAATCTGTGCCAGTTAAGGTTCCTTTGAAAATGGGTCTAAAGTGTGTCACTGCCAAGTGATTTGAGTGTGAGGGTGCAGCTTACAGATTTTGATTTTACATCTCAAGGACGGGGGTAAGAGATAACACTCTAAATTTGCCACCATCAAACAAATTTGTTTATTAGAGGAGAGAAGATGTGAACATATTAAATAAGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55469 True 920 lncRNA 0.45 2 23337333 23358085

Neighbor

gene id symbol gene type direction distance location
LOC120557228 rap1b,rap1a,rap1ab,LOC105901888,LOC106566052,LOC107560426,LOC107742898 coding upstream 30267 23282142 ~ 23307066 (+)
timm17a timm17a,LOC102789540 coding upstream 56604 23274429 ~ 23280729 (+)
lmod1b lmod1 coding upstream 65778 23266849 ~ 23271555 (+)
shisa4 shisa4,LOC102788956 coding upstream 71470 23256518 ~ 23265863 (+)
ipo9 ipo9 coding upstream 83115 23234327 ~ 23254218 (+)
cttnbp2nla cttnbp2nl,LOC102311171,LOC100709543 coding downstream 115263 23473348 ~ 23487987 (+)
LOC120557289 wnt2b,LOC104945808 coding downstream 135667 23493752 ~ 23504705 (+)
tox2 tox2,LOC104948894,LOC108231505 coding downstream 213517 23571602 ~ 23665613 (+)
rbck1 rbck1 coding downstream 467641 23825726 ~ 23835968 (+)
LOC120558070 cdh22 coding downstream 614308 23972393 ~ 24165819 (+)
G41207 NA non-coding upstream 56140 23280937 ~ 23281193 (+)
G41126 NA non-coding upstream 81806 23254942 ~ 23255527 (+)
LOC120557222 NA non-coding upstream 104375 23232172 ~ 23232958 (+)
G41118 NA non-coding upstream 121538 23214158 ~ 23215795 (+)
G41114 LOC104933616,LOC107385352,LOC103355892,LOC103464385 non-coding upstream 165027 23163529 ~ 23172306 (+)
G41231 NA non-coding downstream 9300 23367385 ~ 23368351 (+)
G41291 NA non-coding downstream 478613 23836698 ~ 23836903 (+)
G41308 NA non-coding downstream 488708 23846793 ~ 23847938 (+)
LOC120556870 NA non-coding downstream 510286 23868371 ~ 23870584 (+)
G41346 NA non-coding downstream 917975 24276060 ~ 24276910 (+)
itga7 itga7 other upstream 1344722 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 1993622 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 3188643 20148104 ~ 20148690 (+)
abhd14b abhd14b other upstream 3413784 19917889 ~ 19923549 (+)
cenps LOC103362653,LOC103137101,LOC103464519 other upstream 3477992 19851548 ~ 19859341 (+)
cbfa2t2 cbfa2t2 other downstream 376863 23734948 ~ 23771932 (+)
znfx1 NA other downstream 489962 23848047 ~ 23867512 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 1197440 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 1850071 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 2324322 25682407 ~ 25690935 (+)

Expression


Co-expression Network