G41375 (itch,LOC104964281,LOC107681287,LOC101070007,LOC108231686,LOC103355463)


Basic Information

Item Value
gene id G41375
gene name itch,LOC104964281,LOC107681287,LOC101070007,LOC108231686,LOC103355463
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 24540909 ~ 24542153 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU55653
ctctggacagcctccaCTCTGCCACCAACCTGATGTATTCCTCTTTATTTTCCTCAGTTACTTGGATGTTCCCTCCATCTGGTTTCAGCTCGTGGGTGGTGACCTCCCCCAGGATCTCCTTGTCAACGGAGAAGAACATCTCCAGACCACACTCCTCTATATTATTATCCTTGATCCAGATGAGTGAGTTGTAAAACTCCGGATCGATGGACTCCAGGTCTTTGAGAGCCAGAGGTTTG

Function

symbol description
itch Enables several functions, including arrestin family protein binding activity; ubiquitin protein ligase activity; and ubiquitin-like protein ligase binding activity. Involved in several processes, including negative regulation of defense response to virus; positive regulation of receptor catabolic process; and protein ubiquitination. Acts upstream of or within ubiquitin-dependent protein catabolic process. Located in cytoplasmic vesicle; nucleoplasm; and plasma membrane. Part of protein-containing complex. Colocalizes with early endosome.

NR:

description
PREDICTED: E3 ubiquitin-protein ligase Itchy-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU55653 True 239 lncRNA 0.49 3 24540909 24542153

Neighbor

gene id symbol gene type direction distance location
eya2 eya2,LOC103355465,LOC102207428 coding upstream 19601 24490859 ~ 24521308 (+)
gcnt7 gcnt7,LOC102795321,LOC102207891 coding upstream 91540 24441312 ~ 24449369 (+)
LOC120558070 cdh22 coding upstream 375090 23972393 ~ 24165819 (+)
rbck1 rbck1 coding upstream 704941 23825726 ~ 23835968 (+)
tox2 tox2,LOC104948894,LOC108231505 coding upstream 875296 23571602 ~ 23665613 (+)
rdh5 rdh5,LOC104964277 coding downstream 19552 24561705 ~ 24567422 (+)
gls2b LOC103355460,LOC104964278 coding downstream 26338 24568491 ~ 24583147 (+)
asic1b asic1,LOC104953473,LOC102798299 coding downstream 81339 24623492 ~ 24822313 (+)
smarcd1 smarcd1 coding downstream 285653 24827806 ~ 24858457 (+)
LOC120557580 gpd1,LOC102799081 coding downstream 317108 24859261 ~ 24864094 (+)
G41368 NA non-coding upstream 17302 24521599 ~ 24523607 (+)
LOC120557758 NA non-coding upstream 86890 24452621 ~ 24454019 (+)
G41360 NA non-coding upstream 89340 24436382 ~ 24451569 (+)
G41354 NA non-coding upstream 119026 24419201 ~ 24421883 (+)
G41346 NA non-coding upstream 263999 24276060 ~ 24276910 (+)
G41441 NA non-coding downstream 379483 24921636 ~ 24921851 (+)
G41518 NA non-coding downstream 480305 25022458 ~ 25022749 (+)
LOC120557911 NA non-coding downstream 510683 25052836 ~ 25065136 (+)
G41539 NA non-coding downstream 543261 25085414 ~ 25085842 (+)
LOC120558031 NA non-coding downstream 557134 25099287 ~ 25113176 (+)
znfx1 NA other upstream 673397 23848047 ~ 23867512 (+)
cbfa2t2 cbfa2t2 other upstream 768977 23734948 ~ 23771932 (+)
itga7 itga7 other upstream 2548298 21950376 ~ 21992611 (+)
vgll4b vgll4 other upstream 3197198 21295102 ~ 21343711 (+)
G40353 rassf1,LOC102778369 other upstream 4392219 20148104 ~ 20148690 (+)
bloc1s1 bloc1s1,LOC102796612 other downstream 13372 24555525 ~ 24560318 (+)
slc12a5a LOC103355988 other downstream 666003 25208156 ~ 25310553 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other downstream 1140254 25682407 ~ 25690935 (+)
LOC120558082 kcna10,LOC104941363 other downstream 1224939 25767092 ~ 25872919 (+)
LOC120558088 LOC104941431 other downstream 1362616 25904769 ~ 25907738 (+)

Expression


Co-expression Network