XLOC_005089 (vps25)


Basic Information

Item Value
gene id XLOC_005089
gene name vps25
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3714076 ~ 3721957 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009888
GACGCGGAGCCGCACATCAACAGAACTGGTCGAAATCTGCGATGAGTTTTGAGTGGCCCTGGCAGTATAACTTTCCTCCATTCTTTAcATTGCAGCCAAATGTTGACACAAGACAGAAGCAGCTGGCGGCCTGGTGTTCGCTGGTTTTGTCCTACTGTCGACACCGCAAACTCTACACCCTGGACGTGCTCGAAGCACAGGAGAGCCCCGTATTCAACAACAAGAAAATCGAGAGAAAACTTTCAGTGGAAGCCATACAAGTAGTTTTTGAAGAGTTGAGAAAAAAAGGAAATCTGGAATGGTTGGATAAGAATAAATCACGATGTCTTATCATGTGGAGGAGACCCGAGGAGTGGGGCAAGCTCATCTATCAGTGGGTTTCCAAGAACGGGATGGTCAACTCTGTGTTTACACTTTATGAACTCGCTAATGGAGACGACACGGAAAAAGAAGAGTTTCACGGGCTAGAGGATTGGATGTTGCTGCGTTCACTACAGGCCCTGCAGACTGACGGGAAGGCAGAAATCATCACTGTGGATGACGGAAAAGGAGTCAAATTCTTTTGAATACGAATTTCTCAAGTCAGACTTTGGGATTTGCGACTGGGTTCTGTCACGAGTTCATTCGGATGCTTTCAGGACTCGATATGTTACACTCCACTATTAAATCTGTCATTATTTGGCACAAACTaaattttaaagggataattcccCCAAAAcagataattctgtcatcatttacctttttcttgttccaaaccattttaagtttctttattctgttaaacactaaagagaaTATTCTGAAAAacgttggaaacctgtaaccattgacctccatagtatttgtttatgcTACTATTGAGATCAATGGTTAAGAGGTTTCTAACATATTATTCGGTTAAACACTAAAACCGATAGTTTAGCTGAAgtccggtaaccattgacttctatagtaggaaaaacaaatactatagaagtcaatggttaccggttttcaacattcttcaaattatcttcttttgtgttcaagaggaaaaaagacattttaaaaccatttgacAATGCTTAAATGgtgaatattttttatgtttggggtgaactatccctttaagggtcTTCCTTGTTGGAAAAGGATTAGATTGGTGGTTTTACACCTGGTTTTTGAGTCGactaaaatcatgattttgttcttaaagggatagttcgccccAAAATGAATATTcagacatcatttactcaccctcaagtcttTCCAAACTATTTTAGTCCTCTGTTAAaccaaaagaagatgttttgaaaaatgtttaaaaccggtaaccattgacttccatagtatttgtttttgctacgATGGAAGTcgatagttacaggtttctaacatatTATTcggttaaacactaaagaagaaatTTCAACTGGAATCCAGTACCCATTaacttccatggtaggaaaaacaaatactatggaaggcaatggttaccggttttcagcattcttcaaaatatcttttttgtgttcaagagaaaaaaagacaatttaaaaACCATTTGAGAGAGCGTAAATagtgaaaaaaaatactatggaagtcaatggttaccggttttaaacatttttcaaaacatcttcttttggtTTAACAGAGGAATAAAAGAGTTGGGAAAGACTTTaggaatagttcaccctaaaatgaatattcagacatcatttactcaccctctttCCAAACTATTTTATCCCTCTGTTAAACTAAAAgatgttttgagaaatgtttgaaaccggtaaccattgacttccatagtatttttcttcctactatggaagtcaatggttattagctttcttcaaaacatcctcTTTTAGTGTTCTAAAAGTCTGATAAAGATTTGGAAAtgcttgagggagagtaaatactgagtaaatgttcatttttgagtgaactatcccttcagcCAATTTGCATGCAAAGCGAAACATCAGACCAAACCTAAGGAGTATCAGTATGTTTATATTCTATCTTTTTCCTGTACATATGTTTTTATTCCAGTCCATTTATCGCTGTCAATCCTGAAGGTCTCTTGTTCGACTTGAAGATTTGTGTATAAccacaaagccaaaaaaacaCGGCTGTTTGTGAATCCCGCGACGCTTCCTGGCAAAGAGGAGATGTTCTTCAGTAAGTGTGTTGTTTATGACGGATCTCGCTGAATTCTGGTAGCATCCACTCCTTTTCCTCAGCTATCACTGTATCTTACCACCCTTTTATACCGAtgtaatactgtataaataaatgagGGAGACATTTTTTGGTTCTCTCTTGCAACCACCA

Function

symbol description
vps25 Predicted to enable protein homodimerization activity and structural molecule activity. Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within multivesicular body sorting pathway and protein transport. Predicted to be located in cytoplasm. Predicted to be part of ESCRT II complex. Orthologous to human VPS25 (vacuolar protein sorting 25 homolog).

GO:

id name namespace
GO:0043328 protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway biological_process
GO:0015031 protein transport biological_process
GO:0071985 multivesicular body sorting pathway biological_process
GO:0000814 ESCRT II complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04131 Membrane trafficking
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-050506-30 Predicted to enable protein homodimerization activity and structural molecule activity. Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within multivesicular body sorting pathway and protein transport. Predicted to be located in cytoplasm. Predicted to be part of ESCRT II complex. Orthologous to human VPS25 (vacuolar protein sorting 25 homolog).

Ensembl:

ensembl_id ENSDARG00000059079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009888 True 2328 mRNA 0.38 6 3714076 3721957

Neighbor

gene id symbol gene type direction distance location
XLOC_005088 CABZ01069040.1 coding downstream 8214 3652015 ~ 3705862 (-)
XLOC_005087 NA coding downstream 143995 3569747 ~ 3570081 (-)
XLOC_005086 NA coding downstream 170060 3519168 ~ 3544016 (-)
XLOC_005085 TANC2 coding downstream 260487 3314504 ~ 3453589 (-)
XLOC_005084 lsm12b coding downstream 414927 3287783 ~ 3299149 (-)
XLOC_005090 tlcd3bb coding upstream 18648 3740605 ~ 3756405 (-)
XLOC_005091 MAZ coding upstream 44600 3766557 ~ 3778848 (-)
XLOC_005092 NA coding upstream 60664 3782621 ~ 3786382 (-)
XLOC_005093 taok2b coding upstream 67157 3789114 ~ 3840664 (-)
XLOC_005094 NA coding upstream 138507 3860464 ~ 3865234 (-)
XLOC_005083 NA non-coding downstream 429167 3281756 ~ 3284909 (-)
XLOC_005073 NA non-coding downstream 969435 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 1044576 2625669 ~ 2669500 (-)
XLOC_005102 NA non-coding upstream 367780 4089737 ~ 4129820 (-)
XLOC_005103 NA non-coding upstream 421637 4143594 ~ 4169699 (-)
XLOC_005105 NA non-coding upstream 468065 4190022 ~ 4194304 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_04214987_04217836 VPS25 coding CI01000047 null 4214987 ~ 4218477 (+)