slc16a1a (slc16a1,LOC102208676,LOC102781600)



Basic Information


Item Value
gene id slc16a1a
gene name slc16a1,LOC102208676,LOC102781600
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25682407 ~ 25690935 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>TU55973
CAGATTGCCCAGCTGTTTTGATCTGGGCACTGGATGACCTGAACTTTTCAGCTTCACTTTACTCACTTTTGATGAAGTCTGAGGCTGAGGTGCCACTGGCAACTTTTGGACTGTCACAGTGGATATAGACCCACAGATAACGTCTGGAGTATCTGTGAAACATATGTagtgatttctttatttttttacatattgaGAGATGCTCAGTCCCATTCAATGATGTCTGCTGCGTGTTAAGGTGCCTCCGAGACTGCTGTTTATCTGCAGAGCTCATCTGTCCCTGTTCGAGAGCGCCTGCTAAGGTCCTTGTATCTGTAAAACGTGCTGAAATTGAAGAGGAGTTTGGTGAGTGAAAATGGCGCCCGCCGTCGGTGGTCCTCAAGGCTACACACCACCTGAGGGTGGCTGGGGATGGATGGTGGTAGTTGGGGCCTTCATCTCGATTGGCTTCTCCTACGCGTTTCCCAAGTCCATCACTGTCTTCTTTAAAGAGATTGAGGTGATCTTCGATGTGACCAGCAGCCAGGTGTCCTGGATCTCTTCCATCATGTTA
>XM_039796292.1
ACTAAGCCTCCCACAGCCAATAAGAACTTGACTGACTTCAACATTTAGCACCATACTATCCAGATTGCCCAGCTGTTTTGATCTGGGCACTGGATGACCTGAACTTTTCAGCTTCACTTTACTCACTTTTGATGAAGTCTGAGGCTGAGGTGCCACTGGCAACTTTTGGACTGTCACAGTGGATATAGACCCACAGATAACGTCTGGAGTATCTGTGAAACATATGTagtgatttctttatttttttacatattgaGAGATGCTCAGTCCCATTCAATGATGTCTGCTGCGTGTTAAGGTGCCTCCGAGACTGCTGTTTATCTGCAGAGCTCATCTGTCCCTGTTCGAGAGCGCCTGCTAAGGTCCTTGTATCTGTAAAACGTGCTGAAATTGAAGAGGAGTTTGGTGAGTGAAAATGGCGCCCGCCGTCGGTGGTCCTCAAGGCTACACACCACCTGAGGGTGGCTGGGGATGGATGGTGGTAGTTGGGGCCTTCATCTCGATTGGCTTCTCCTACGCGTTTCCCAAGTCCATCACTGTCTTCTTTAAAGAGATTGAGGTGATCTTCGATGTGACCAGCAGCCAGGTGTCCTGGATCTCTTCCATCATGTTACGCCTTCTGAcgtctgtgtttgtgcattgTTTTTTCTGCTCTTCAGGTCCCATCAGCAGCATCCTGGTTAATAAATATGGGAGTCGTCCTGTTATGATGGCGGGGGGATGCCTGTCTGGATTGGGCCTCATTGCTTCCTCTTTCTGCAATTCTGTTCAGGCACTGTACTTTTGTATTGGTGTGGTGGGAGGTTTGGGATTGGCCTTCAACCTCAACCCTGCCCTCACTATGATTGGAAAGTACTTCTACAAAAGGCGGCCTATTGCTAATGGAATTGCCATGGCTGGCAGCCCTGTTGTTCTCTGCACCATGGCTCCTATAAACACCTGGCTTTTTGAGAAGTTTGGCTGGAGAGGAAGTTTCTTGATCCTGGGTGGCCTGCTCTTTAATTGCTGTGTTGCCGGTTCCCTCATGCGACCTATAGGACCAAAACCAAAACCTGCAGAGAAGGCTACAGGGAGGAGGACTGTCACACAGACCATCAACAGCTTCATTGACCTCTCTTTGTTCAAACACCGTGGCTTTGTACTATATATCGTGGGCAATATTATCATGTTTTTTGGTCTCTTTGCGCCACTTGTGTTCCTCAGTAATTTTGCAAAGAGTAAAGACATCCCTAAAGAGAAGGCAGCTTTCTTACTGTCTGTGCTGGCTATTGTGGACATGGTTGCCCGGCCCTCAATGGGCATTGTGGCTAACACTAAGTGGGTCCGGCCCAGAATACAGTACTTCTTTGCTGCGTCTGTGCTGTACAACGGTGTTTGCCATGTTCTAGCACCAATATCAGTAGACTACAAAGGCTTTGTGATTTATGCCATCTTCTTTGGGTTTGCTTTTGGCTGGCTGAGCGCAGTGCTGTTTGAGACCTTGATGGACCTGGTGGGAGCCCAGCGCTTCTCCAGTGCTGTTGGGCTGGTCACTATCGTGGAGTGTGGTCCTGTACTGTTAGGACCCCCTTTGCTTGGGAAGTTCAAAGACATCTATCATGATTACAAGTACACGTACCAGGGCTGCGGGATCCTCCTCATTATCTCCAGTTTCATCCTGTTTGCAGGGATGGGACTCAACTATCGACTGCTGgccaaagagaaaaaagaggaggagaggatgtcCAGGGTGGGAGGTAGAGAACAAAAGTTCAACAGGGACAATGCTGCTAAGGAGGTGGCAGAGGCTGGAAACACAGAAGACACTGTCTGATATTCTGTACCATGTCATGTTACATTTTTGGTCAATTTAATCTTGTTTGTGAGTGAAACAAGGCAGCAGATAAACATTATTTTGAGTCATTTTCTGTTTCATAATGAATAGTTTTTTAAGACCATTACAGAAAGCATCACCTGCAATTTAATGCAACATATTTACACACCTAAAGGCCTTTAAACTCTAATGAACAAGCCACATAAAATACCTCTAATAGTCTTTTAGGGACTGTTATACCGGATGTGTTTGGTAGACTATTCAAGTTTGCTTAGCCTTATGTCACTTATATTGTTGGGAGATGATGGTATTTCTTTAATCTCAGATGGTATCACTATATTTTTGCAGAATTTTACCTTCTAAAATGGACCATCAGATAATTAGTTATTTTTCAGTCGGGAAGTGCTCTATATTTTAAAAGGGATGGCAAACATTCTCTGTTGAAGTGCATAATTATAGTATTCACCACATCATGCTTGCCATGCCATCattcaaatacatttataaagactttttttcctGTTTACAAGGCCTGCTGTCTGTGCAGTTTTGAAAGGTTTGAAAACATCCTTAGTGCGACTCTCACTTTATATATTCCACAAATATATTCTTACTAATTctctatttctattttaaacatgttttgctTGGTCCAACTCTGAGGGCATTTAACATTGTTGCATAACTTTATGTATTCACATGATAGTAAAATGTGCTACTGACTGCAAGTTACTGACACGTCAGAAAATCAAATAAACTGTCATTTGACAAGAAT

Function


symbol description
slc16a1 Enables monocarboxylic acid transmembrane transporter activity. Involved in centrosome cycle and monocarboxylic acid transport. Located in several cellular components, including cell junction; centrosome; and plasma membrane. Is integral component of plasma membrane. Part of apical plasma membrane; basal plasma membrane; and lateral plasma membrane. Implicated in familial hyperinsulinemic hypoglycemia 7.

NR:

description
monocarboxylate transporter 1-like isoform X2

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0015718 monocarboxylic acid transport biological_process
GO:0007130 synaptonemal complex assembly biological_process
GO:0000795 synaptonemal complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU55973 False 553 lncRNA 0.48 2 25682467 25685984
XM_039796292.1 True 2588 mRNA 0.44 5 25682407 25690935

Neighbor


gene id symbol gene type direction distance location
tafa3a fam19a3,LOC106517667,LOC104918365,LOC102289964,LOC101471348 coding upstream 158806 25405480 ~ 25523601 (+)
mov10a LOC103356046,LOC100704454,LOC101471942,LOC102210509,LOC102290565 coding upstream 336631 25331148 ~ 25345776 (+)
capza1a LOC104945687,LOC106582739 coding upstream 352740 25323394 ~ 25329667 (+)
LOC120558032 NA coding upstream 562041 25114918 ~ 25120366 (+)
LOC120557917 vapb,LOC101078863,LOC108231687,LOC103355448 coding upstream 735664 24923839 ~ 24946743 (+)
sycp1 NA coding downstream 2396 25693331 ~ 25702368 (+)
tshba LOC100534562,LOC102782486 coding downstream 26270 25717205 ~ 25719000 (+)
slc25a55a LOC104918372,LOC102313117,LOC102207676,LOC102783067,LOC100695863 coding downstream 31856 25722791 ~ 25728382 (+)
LOC120558083 LOC103356159,LOC100696388,LOC101468283 coding downstream 139176 25830111 ~ 25831910 (+)
LOC120558084 kcna2,LOC104918376,LOC107385044,LOC101171484 coding downstream 153529 25844464 ~ 25852160 (+)
G41630 NA non-coding upstream 135567 25546509 ~ 25546840 (+)
G41629 NA non-coding upstream 136107 25545917 ~ 25546300 (+)
LOC120558141 NA non-coding upstream 181436 25499083 ~ 25500971 (+)
G41570 NA non-coding upstream 368148 25313719 ~ 25314259 (+)
LOC120558031 NA non-coding upstream 569231 25099287 ~ 25113176 (+)
G41694 rplp2,LOC104941383,LOC104918380 non-coding downstream 194287 25885222 ~ 25887733 (+)
LOC120557323 NA non-coding downstream 230819 25921754 ~ 25923063 (+)
G41746 LOC103355883,LOC106954216,LOC104941313 non-coding downstream 310546 26001481 ~ 26002751 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding downstream 335620 26026555 ~ 26027210 (+)
LOC120557409 NA non-coding downstream 531142 26222077 ~ 26252094 (+)
slc12a5a LOC103355988 other upstream 371854 25208156 ~ 25310553 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 1122089 24555525 ~ 24560318 (+)
znfx1 NA other upstream 1814895 23848047 ~ 23867512 (+)
cbfa2t2 cbfa2t2 other upstream 1910475 23734948 ~ 23771932 (+)
itga7 itga7 other upstream 3689796 21950376 ~ 21992611 (+)
LOC120558082 kcna10,LOC104941363 other downstream 76157 25767092 ~ 25872919 (+)
LOC120558088 LOC104941431 other downstream 213834 25904769 ~ 25907738 (+)
G41825 NA other downstream 577667 26268602 ~ 26273315 (+)
G41850 rps10,LOC102793608 other downstream 851572 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 961916 26652851 ~ 26764737 (+)

Expression



Co-expression Network