LOC120558088 (LOC104941431)


Basic Information

Item Value
gene id LOC120558088
gene name LOC104941431
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 25904769 ~ 25907738 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU56061
acctGTTTGTGGGTATACATATGGGTGATTATTGCACAAACTCTCTTGCAGAAAAAAGTGGCAACTTCCACTGTCTTAAAAGCTTTAGTTTCATATCACTGTTGTGCTTCTGTTTATATTGAAGTTCCAGTTCTTTTGTCAGTTTCACAGAAAGCACACACTGTGTTGGAAATTACCTTCACTATCACTATCTTTGAAAAAGAATTGAACTTTTATGACACTAGAAAGATAAATTCAGACATCTTAAgcattatttttgttgtaattaAATTGGGAACATTCATTTTATGGCATGTAGCCGTGTACACCTGACTAGAAAACTAGAAAACCATGTACAATGTTATATAGTCAAACAGCCCTGTAAGAGAACTCTTTAGACCTTCAGCCCATATTAGACCGGTGTGAGATGTATAGTAATTTATTTGAATCTGTAGTTTTCAATCCATTGATTGGATAGCATAGACATCTTATAATAATATGTCTTCCCCCATTGAAAAGGAAGtagaaaaaacatttcaaaagagTGCAGTCTACCACAACACCACCACAAAATACAGCTTCAAGAATTACCCAAAAGTTGAGTCAGCTAGTCCTTACAAGTATCACAAAGGAAGCATTTATTGCACAACTGTTGGTTGCACAgatatacacagatacacaataTGGAATATCACCAATACGTGACCAACTACCAGTTGTACTACCACAGCTAACAAAAAGCAtaaacaatatactgtacagaTGTTTCTTTTTTGTACCAGTTCATAATAATTGATGTAGTTTTAACAAGCAATCTCAAGAgtagtctggctcaacagatGTACATTACTGGGATGAAGCCTGACGGGTGTCCCTCCCCTCTCACTATCTCCAGTATCggggcttagcgccacccaggactgttgtgattgatttaaagaaatacaaacaagatagcgttttttcccctatcccagaatagctAGGCAGTGTAGCTACCATACTCCATCGCTGATCGGGTTGTTTTTATAACATTGTTAGTGACATCTGTTGGTAATGTGCATTGCATTTtgaatttgttttactttattattttcttataaagtaggctacagtatCAAAACGAGATATTTGCAGTGCACACAGGAGTATAGTGAAAAAGACACACTTGATTTTACAGGTACATCGATTTAATTAAAAGATTAGTACGACATTTTCTTTGGCTAATCAGTATTCATCTTTATtatgctgtttgtttttgtgttaatgCTTGTCTTAAGTTCTTACTTCAGAAATGAAGTGGAAGTTGATTGCTTATGTTCACAGGCTTGTGGTTAGTTGTGTGATAATTAA
>XM_039798946.1
GGCACAGCACATTTAGGCTCAGACATTCAGACACGCTACACCATTAACCACCAAACATAAGCCAGATTGAAAGCACAATGGCTGTGGAAGAAGTCATCTACACGTTGTTCGAGGTGCTTATTGCTGTTAGCTGCTGTCTCGGTAACATGTTGGTTATTTTGGCACTGTGGACCAGTAAAAGCATTCAACAGCCTACCTTCTGCCTtattgtctgtctggctgtggCTGACTTTATGGTTGGCTGCGTGGCCATACCGCTGGCGGTGGTGGTGGATGGACGAGTGAAGACTTCTTTCTACGGCTGTCTCTTCATCAGCTGTGTGGTCATTCTGTTGACCCTAGTCtcagttttttctcttttggctATTGCAGTGGACCGCTTCCTCCGGGTGTTTTTCCCTCTCAGGTACAAAAGGACTGTAACACAGAGACATTCTTGGCTTGTAGTAGCAGCATGTTGGCTTGTTGCAATACCACTGAGCTTTGCTCCCATGCTTGGATGGTGCAACCATGAAACCTGGTCTAAGTCCATCAACTCTACTATTGTCTGCAAGTTTATAGATGTGATCCCCATGTCATACCTGGTTTACTTCAACTTCTTTCTTTGCACCCTGCCACCTCTGTTGGTGATGACTGTATTGTACGCCTACATTTTCTGGACAATCCGAGGAAACCTTCGAGAGAAACCAGGCAACGGTGCCCAAAACCAGTCGCAGATGTAcctaaagaaagagagacagctgGCAGGATCTCTGTCTCTGGTCTTGGCTCTGTTtgtgctgtcctggctccctcTCCACATAATGAACTGCATACTTTACTTTGGTGGGCCAAATGATGTACCATTACCAGTAGTCTATATTGGCATTCTGCTTTCTCATGCTAACTCAGCTGTAAACCCAGTTGTGTAtgcattcaaaatacaaaaGATCAAGACAGCGTACCTGAAGCTCTGGAGACGGTATATTTCATGTGGAGAAGAAAATCAAGGATCTCAGACAAGCCAGTCGACAGACAACAATCTCAGTAGTGTGGCCAACAATGAGTGAAggaatattttgtttgtttgcttcttTGTTTTTAAGGAAAGGTTTGATTGACTATTGAGCATAATTAAACATTGGTCAAACACATTGAGTGAAAAGTTAAGAAAGTCAGTTAAAGTATGTGACGTTTGAAATTATTGAAATCCAAAAGCTACCTTTAAAGGATGAGGATGATGTTCTGTGTATTGATACTGTGAAGATATCCAGCCAATTGCACTGAAATATCGCTATGTTCAGgaatctgtttgtgtttgtgtgacctGTTTGTGGGTATACATATGGGTGATTATTGCACAAACTCTCTTGCAGAAAAAAGTGGCAACTTCCACTGTCTTAAAAGCTTTAGTTTCATATCACTGTTGTGCTTCTGTTTATATTGAAGTTCCAGTTCTTTTGTCAGTTTCACAGAAAGCACACACTGTGTTGGAAATTACCTTCACTATCACTATCTTTGAAAAAGAATTGAACTTTTATGACACTAGAAAGATAAATTCAGACATCTTAAgcattatttttgttgtaattaAATTGGGAACATTCATTTTATGGCATGTAGCCGTGTACACCTGACTAGAAAACTAGAAAACCATGTACAATGTTATATAGTCAAACAGCCCTGTAAGAGAACTCTTTAGACCTTCAGCCCATATTAGACCGGTGTGAGATGTATAGTAATTTATTTGAATCTGTAGTTTTCAATCCATTGATTGGATAGCATAGACATCTTATAATAATATGTCTTCCCCCATTGAAAAGGAAGtagaaaaaacatttcaaaagagTGCAGTCTACCACAACACCACCACAAAATACAGCTTCAAGAATTACCCAAAAGTTGAGTCAGCTAGTCCTTACAAGTATCACAAAGGAAGCATTTATTGCACAACTGTTGGTTGCACAgatatacacagatacacaataTGGAATATCACCAATACGTGACCAACTACCAGTTGTACTACCACAGCTAACAAAAAGCAtaaacaatatactgtacagaTGTTTCTTTTTTGTACCAGTTCATAATAATTGATGTAGTTTTAACAAGCAATCTCAAGAgtagtctggctcaacagatGTACATTACTGGGATGAAGCCTGACGGGTGTCCCTCCCCTCTCACTATCTCCAGTATCggggcttagcgccacccaggactgttgtgattgatttaaagaaatacaaacaagatagcgttttttcccctatcccagaatagctAGGCAGTGTAGCTACCATACTCCATCGCTGATCGGGTTGTTTTTATAACATTGTTAGTGACATCTGTTGGTAATGTGCATTGCATTTtgaatttgttttactttattattttcttataaagtaggctacagtatCAAAACGAGATATTTGCAGTGCACACAGGAGTATAGTGAAAAAGACACACTTGATTTTACAGGTACATCGATTTAATTAAAAGATTAGTACGACATTTTCTTTGGCTAATCAGTATTCATCTTTATtatgctgtttgtttttgtgttaatgCTTGTCTTAAGTTCTTACTTCAGAAATGAAGTGGAAGTTGATTGCTTATGTTCACAGGCTTGTGGTTAGTTGTGTGATAATTAAGCCCTTTTTCCATTTCCTCACTTTAAGAATCTATTCAGCTCTATTTTCTTTTGTACATACCCTACACCTTTgaagttaaaaataaacttgtttccTGTTAATGAA

Function

NR:

description
PREDICTED: adenosine receptor A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56061 False 1332 lncRNA 0.36 1 25906302 25907633
XM_039798946.1 True 2741 mRNA 0.39 2 25904769 25907738

Neighbor

gene id symbol gene type direction distance location
LOC120558086 LOC104941373 coding upstream 21688 25878956 ~ 25883081 (+)
LOC120558084 kcna2,LOC104918376,LOC107385044,LOC101171484 coding upstream 52609 25844464 ~ 25852160 (+)
LOC120558083 LOC103356159,LOC100696388,LOC101468283 coding upstream 72859 25830111 ~ 25831910 (+)
slc25a55a LOC104918372,LOC102313117,LOC102207676,LOC102783067,LOC100695863 coding upstream 176387 25722791 ~ 25728382 (+)
tshba LOC100534562,LOC102782486 coding upstream 185769 25717205 ~ 25719000 (+)
LOC120557320 tulp1 coding downstream 15469 25923207 ~ 25935275 (+)
tead3b tead3,LOC103355928,LOC108231638,LOC102786312 coding downstream 30573 25938311 ~ 25972929 (+)
smpd2b smpd2,LOC102787414 coding downstream 66287 25974025 ~ 25984043 (+)
pkp1b NA coding downstream 77412 25985150 ~ 25997555 (+)
nav1b nav1,LOC103355819 coding downstream 126013 26033751 ~ 26114173 (+)
G41694 rplp2,LOC104941383,LOC104918380 non-coding upstream 17036 25885222 ~ 25887733 (+)
G41630 NA non-coding upstream 357929 25546509 ~ 25546840 (+)
G41629 NA non-coding upstream 358469 25545917 ~ 25546300 (+)
LOC120558141 NA non-coding upstream 403798 25499083 ~ 25500971 (+)
G41570 NA non-coding upstream 590510 25313719 ~ 25314259 (+)
LOC120557323 NA non-coding downstream 14016 25921754 ~ 25923063 (+)
G41746 LOC103355883,LOC106954216,LOC104941313 non-coding downstream 93743 26001481 ~ 26002751 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding downstream 118817 26026555 ~ 26027210 (+)
LOC120557409 NA non-coding downstream 314339 26222077 ~ 26252094 (+)
G41827 LOC106518302,LOC101482215,LOC102196619,LOC102290668 non-coding downstream 367384 26275122 ~ 26275929 (+)
LOC120558082 kcna10,LOC104941363 other upstream 31850 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 213834 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 594216 25208156 ~ 25310553 (+)
bloc1s1 bloc1s1,LOC102796612 other upstream 1344451 24555525 ~ 24560318 (+)
znfx1 NA other upstream 2037257 23848047 ~ 23867512 (+)
G41825 NA other downstream 360864 26268602 ~ 26273315 (+)
G41850 rps10,LOC102793608 other downstream 634769 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 745113 26652851 ~ 26764737 (+)
ephb2b LOC104917933,LOC103376520 other downstream 1763225 27670963 ~ 27823260 (+)
G42449 NA other downstream 3332675 29240413 ~ 29242253 (+)

Expression


Co-expression Network