G41827 (LOC106518302,LOC101482215,LOC102196619,LOC102290668)


Basic Information

Item Value
gene id G41827
gene name LOC106518302,LOC101482215,LOC102196619,LOC102290668
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26275122 ~ 26275929 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU56254
CTCTGcaatctcttcctctctctctttcttcattgcATTGAGTTTCTTTAGCATGCGGCGGAAGTCTGTGATACCATACTCTACACAGATGCGCTCATAGTCTTTCTTGTCTGCACTAAGGAGAATTTCCCAGACCTTCTCTTCTGGCTCCATTGGCTTTTGCTCACGTGTTCCATCAGGATTAcgttttttaagcttttttcttAAGTCCGTTACATCTTCTCCTTGTTGCTTTTGAAGTTCCTTGG

Function

NR:

description
PREDICTED: immunoglobulin-like and fibronectin type III domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56254 True 248 lncRNA 0.43 3 26275122 26275929

Neighbor

gene id symbol gene type direction distance location
LOC120557651 LOC107089162,LOC104944127,LOC103355802 coding upstream 105037 26129594 ~ 26170085 (+)
mybphb LOC103464713,LOC107089157 coding upstream 150384 26114854 ~ 26124738 (+)
nav1b nav1,LOC103355819 coding upstream 160949 26033751 ~ 26114173 (+)
pkp1b NA coding upstream 277567 25985150 ~ 25997555 (+)
smpd2b smpd2,LOC102787414 coding upstream 291079 25974025 ~ 25984043 (+)
nudt3b nudt3 coding downstream 255584 26531513 ~ 26540962 (+)
pacsin1b LOC104965611,LOC103355721 coding downstream 274888 26550817 ~ 26585593 (+)
snrpc NA coding downstream 354500 26630429 ~ 26633652 (+)
slc2a1b slc2a1,LOC108231650,LOC104928076 coding downstream 514555 26790484 ~ 26815402 (+)
si:dkey-166d12.2 LOC100709810,LOC102797006,LOC102307918,LOC103355584 coding downstream 569921 26845850 ~ 26962727 (+)
LOC120557409 NA non-coding upstream 23028 26222077 ~ 26252094 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding upstream 247912 26026555 ~ 26027210 (+)
G41746 LOC103355883,LOC106954216,LOC104941313 non-coding upstream 272371 26001481 ~ 26002751 (+)
LOC120557323 NA non-coding upstream 352059 25921754 ~ 25923063 (+)
G41694 rplp2,LOC104941383,LOC104918380 non-coding upstream 387389 25885222 ~ 25887733 (+)
G41834 LOC104955002 non-coding downstream 48876 26324805 ~ 26338204 (+)
G41835 NA non-coding downstream 68208 26344137 ~ 26345459 (+)
LOC120557964 NA non-coding downstream 124524 26400453 ~ 26404902 (+)
G41865 tcp11 non-coding downstream 431340 26707269 ~ 26709577 (+)
G41927 NA non-coding downstream 662548 26938477 ~ 26938745 (+)
G41825 NA other upstream 1807 26268602 ~ 26273315 (+)
LOC120558088 LOC104941431 other upstream 367384 25904769 ~ 25907738 (+)
LOC120558082 kcna10,LOC104941363 other upstream 402203 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 584187 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 964569 25208156 ~ 25310553 (+)
G41850 rps10,LOC102793608 other downstream 266578 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 376922 26652851 ~ 26764737 (+)
ephb2b LOC104917933,LOC103376520 other downstream 1395034 27670963 ~ 27823260 (+)
G42449 NA other downstream 2964484 29240413 ~ 29242253 (+)
ergic3 ergic3,LOC102788871 other downstream 3833606 30109535 ~ 30135834 (+)

Expression


Co-expression Network