G41835


Basic Information

Item Value
gene id G41835
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26344137 ~ 26345459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU56272
CTTCTCCTCCTGCGTCCTGTCTTTGAGGCAGCCACTGATTTGACTATTTCTCCAGattttgattctaactgctgagacgtccagtctggaacataatgtgagcactgtttgtctgaacagataggggctacaaggtcaccctaaaactatcgtacagggaggaggaggcgaaatggctccaagatgtctcttgtatttctctgattgtcttcatgtgtatcagattgcctgtaagaattgtagcgtcataataatccaagtgcgtgtgtgctgtcactctgaagatgcataaaagcctggtgttctgttcactcatttgagaaactgactccacactgggctgcggccttttgtgaaatcatgttgctcctatttgcaaatatatatgtttttaataaaatacaaaaacc

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006401 RNA catabolic process biological_process
GO:0006402 mRNA catabolic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU56272 True 410 lncRNA 0.42 2 26344137 26345459

Neighbor

gene id symbol gene type direction distance location
LOC120557651 LOC107089162,LOC104944127,LOC103355802 coding upstream 174052 26129594 ~ 26170085 (+)
mybphb LOC103464713,LOC107089157 coding upstream 219399 26114854 ~ 26124738 (+)
nav1b nav1,LOC103355819 coding upstream 229964 26033751 ~ 26114173 (+)
pkp1b NA coding upstream 346582 25985150 ~ 25997555 (+)
smpd2b smpd2,LOC102787414 coding upstream 360094 25974025 ~ 25984043 (+)
nudt3b nudt3 coding downstream 186054 26531513 ~ 26540962 (+)
pacsin1b LOC104965611,LOC103355721 coding downstream 205358 26550817 ~ 26585593 (+)
snrpc NA coding downstream 284970 26630429 ~ 26633652 (+)
slc2a1b slc2a1,LOC108231650,LOC104928076 coding downstream 445025 26790484 ~ 26815402 (+)
si:dkey-166d12.2 LOC100709810,LOC102797006,LOC102307918,LOC103355584 coding downstream 500391 26845850 ~ 26962727 (+)
G41834 LOC104955002 non-coding upstream 5933 26324805 ~ 26338204 (+)
G41827 LOC106518302,LOC101482215,LOC102196619,LOC102290668 non-coding upstream 68208 26275122 ~ 26275929 (+)
LOC120557409 NA non-coding upstream 92043 26222077 ~ 26252094 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding upstream 316927 26026555 ~ 26027210 (+)
G41746 LOC103355883,LOC106954216,LOC104941313 non-coding upstream 341386 26001481 ~ 26002751 (+)
LOC120557964 NA non-coding downstream 54994 26400453 ~ 26404902 (+)
G41865 tcp11 non-coding downstream 361810 26707269 ~ 26709577 (+)
G41927 NA non-coding downstream 593018 26938477 ~ 26938745 (+)
LOC120558213 NA non-coding downstream 848713 27194172 ~ 27209333 (+)
G42020 NA non-coding downstream 879824 27225283 ~ 27227610 (+)
G41825 NA other upstream 70822 26268602 ~ 26273315 (+)
LOC120558088 LOC104941431 other upstream 436399 25904769 ~ 25907738 (+)
LOC120558082 kcna10,LOC104941363 other upstream 471218 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 653202 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 1033584 25208156 ~ 25310553 (+)
G41850 rps10,LOC102793608 other downstream 197048 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 307392 26652851 ~ 26764737 (+)
ephb2b LOC104917933,LOC103376520 other downstream 1325504 27670963 ~ 27823260 (+)
G42449 NA other downstream 2894954 29240413 ~ 29242253 (+)
ergic3 ergic3,LOC102788871 other downstream 3764076 30109535 ~ 30135834 (+)

Expression


Co-expression Network