LOC120557964


Basic Information

Item Value
gene id LOC120557964
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26400453 ~ 26404902 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU56281
ATTACTCAAGCTCCAGGTCACTTCCTGTTGCCCCGGAAGTCAGAGCGTCATATAAACCCGACAATCGCGGCAAACATTCCTTTATATACACCAACAGGAGATGCCGACTATGTGGACAGGCAAGACCATCTCTGTGtccatctccatctctacaTCAGAGGGGGTACAGAGAAAAGCGTGGAGGAATTGAACACAGACTGTGACTTCTCTGCTGAACTTCTCTCTAGTCAGTGCAGTGCCAGACATTGAGCTGGATGGCCTCCGTGCCTCTGTGCCTGTTCCAGCAGGATGTTCGGAGCTGTGGTGTACTTTTACCGAGCCTTGACTGGATCCTGGAGTGTCGGTGTCATTCAACGAGgtgactttttttctgtgtgccgATCTGACAGCCAAATTCTGCtttatgatgaatcatgcaagtttaaggagctgatgggataacatttcactggaatcgTACCTCGTAAGATATcatgttacaaataaaaatcgACAATGGATGTCTGCTAATTATCAAATGCAAACACGCTAAACACAGTGACCGTGGTATACCATCTAAACATCATCATTGTGGTTGTTTTCAAGTGATGCtgccgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtaatgtagatGATTTTATAAACAGaatttgaaatgtattgatAATAAAGATAGACATGACTAAATGGTGGTCTACGAACAGTGAAATTGTCTGTGGAAAAAAGCCATTGTACACACTAATCTCAATACTGCACTTGTGAGATAACATTGAACAAAGAAGTACATATAGTCACTAACAAAAACAATCCCCCAAAACAAGATGTGCAGAAAGGAAAATATTTCACAGACCCTGTGATGTTGTTAAGTGCTCTGCTGCACCAAACCAATTTTGCATCAAAAAAAGCCAGATGAAAAGAATTCAAAGCGACAGTGATATAATTTTCCCTGAAATCACTTGCAGCAACATTTTCTCTACAAATGCAGCATTCTTGATTTGGCAATTATAACATATTCTTCTGCTCAAAGTGTTGTACACAAATATAAAGtttataaatactgtatacCTTATCACTTTCCAAGCCTGACCTTCAGCTCATAATAAATAATCCTTTGTAAAGTGCTTGTAGTAGCGGATGTCCATTTTAATTTGAATTACCTGCAAAACTTGTTTTGCATATTTTATGTTGCTGTTTTGTATGCTGAGAAGTGCTTCTTTAGAAAGCATAATAACACTTTCCGGTGTGTTTGCAAACATTCTTTCAACAGAGTGCTTAAATATgtatgtgtggctgtgtgtgctctttagttttttttgtatgaatgcatttttatagtgaaaataaagttTTTCATGATGAAAGCTG
>XR_005639038.1
ATTACTCAAGCTCCAGGTCACTTCCTGTTGCCCCGGAAGTCAGAGCGTCATATAAACCCGACAATCGCGGCAAACATTCCTTTATATACACCAACAGGAGATGCCGACTATGTGGACAGGCAAGACCATCTCTGTGtccatctccatctctacaTCAGAGGGGGTACAGAGAAAAGCGTGGAGGAATTGAACACAGACTGTGACTTCTCTGCTGAACTTCTCTCTAGTCAGTGCAGTGCCAGACATTGAGCTGGATGGCCTCCGTGCCTCTGTGCCTGTTCCAGCAGGATGTTCGGAGCTGTGGTGTACTTTTACCGAGCCTTGACTGGATCCTGGAGTGTCGGTGTCATTCAACGAGgtgactttttttctgtgtgccgATCTGACAGCCAAATTCTGCtttatgatgaatcatgcaagtttaaggagctgatgggataacatttcactggaatcgTACCTCGTAAGATATcatgttacaaataaaaatcgACAATGGATGTCTGCTAATTATCAAATGCAAACACGCTAAACACAGTGACCGTGGTATACCATCTAAACATCATCATTGTGGTTGTTTTCAAGTGATGCtgccgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtaatgtagatGATTTTATAAACAGaatttgaaatgtattgatAATAAAGATAGACATGACTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56281 True 1382 lncRNA 0.39 2 26400453 26404902
XR_005639038.1 False 704 lncRNA 0.44 2 26400453 26404224

Neighbor

gene id symbol gene type direction distance location
LOC120557651 LOC107089162,LOC104944127,LOC103355802 coding upstream 230368 26129594 ~ 26170085 (+)
mybphb LOC103464713,LOC107089157 coding upstream 275715 26114854 ~ 26124738 (+)
nav1b nav1,LOC103355819 coding upstream 286280 26033751 ~ 26114173 (+)
pkp1b NA coding upstream 402898 25985150 ~ 25997555 (+)
smpd2b smpd2,LOC102787414 coding upstream 416410 25974025 ~ 25984043 (+)
nudt3b nudt3 coding downstream 126611 26531513 ~ 26540962 (+)
pacsin1b LOC104965611,LOC103355721 coding downstream 145915 26550817 ~ 26585593 (+)
snrpc NA coding downstream 225527 26630429 ~ 26633652 (+)
slc2a1b slc2a1,LOC108231650,LOC104928076 coding downstream 385582 26790484 ~ 26815402 (+)
si:dkey-166d12.2 LOC100709810,LOC102797006,LOC102307918,LOC103355584 coding downstream 440948 26845850 ~ 26962727 (+)
G41835 NA non-coding upstream 54994 26344137 ~ 26345459 (+)
G41834 LOC104955002 non-coding upstream 62249 26324805 ~ 26338204 (+)
G41827 LOC106518302,LOC101482215,LOC102196619,LOC102290668 non-coding upstream 124524 26275122 ~ 26275929 (+)
LOC120557409 NA non-coding upstream 148359 26222077 ~ 26252094 (+)
G41754 LOC102788777,LOC107089146,LOC101487148,LOC104918388,LOC100698513 non-coding upstream 373243 26026555 ~ 26027210 (+)
G41865 tcp11 non-coding downstream 302367 26707269 ~ 26709577 (+)
G41927 NA non-coding downstream 533575 26938477 ~ 26938745 (+)
LOC120558213 NA non-coding downstream 789270 27194172 ~ 27209333 (+)
G42020 NA non-coding downstream 820381 27225283 ~ 27227610 (+)
G42031 NA non-coding downstream 937697 27342599 ~ 27342850 (+)
G41825 NA other upstream 127138 26268602 ~ 26273315 (+)
LOC120558088 LOC104941431 other upstream 492715 25904769 ~ 25907738 (+)
LOC120558082 kcna10,LOC104941363 other upstream 527534 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 709518 25682407 ~ 25690935 (+)
slc12a5a LOC103355988 other upstream 1089900 25208156 ~ 25310553 (+)
G41850 rps10,LOC102793608 other downstream 137605 26542507 ~ 26548799 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other downstream 247949 26652851 ~ 26764737 (+)
ephb2b LOC104917933,LOC103376520 other downstream 1266061 27670963 ~ 27823260 (+)
G42449 NA other downstream 2835511 29240413 ~ 29242253 (+)
ergic3 ergic3,LOC102788871 other downstream 3704633 30109535 ~ 30135834 (+)

Expression


Co-expression Network