G41865 (tcp11)


Basic Information

Item Value
gene id G41865
gene name tcp11
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 26707269 ~ 26709577 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU56337
CCTGTCCCTCACCTCAGGAGCTCCACAGGGTCCCTGAGGTCGCTCAGTGCCCTGACCGCTGGGTCTCGCACAGGTGCACATAAAGATGCCATGGTGCTGATGATGTATCCCGCCAGTCTGTGGAGATCCAGAGCTCCATGATCGACCTCCTGCTGGATCAGCTCCATGTCCAGCACCTCGTCCAGCTGAGACCTCAGTCTAACGTGAGCGGGTAGCAGCAGGGACTGAAGTATAGTCTTGACTTCCTGCAGCAGAATGACAGCATGGCTGTAGTTTGGAGGATCGCTGTTCAGCTGCTCTTGAAGACTGTCCCAAAACGCCCGGTGAACTATCTCCGTCACTCTGCCTTCCAggCTGTCTGTAGGAGGGCTCCTGGGTTTGAAGCAGAAGTCTTTGTTCAGCACTATCTCATGCGCAAGGTTCAGGTTGGAAACACAATTTTCCAGCTCCATCAGACTGGATAATGAGACGGTGGGTGGGCTCCCTGACACcacagacaggacacacacacacaccctcagatAATTAAAACTGCCAC

Function

symbol description
tcp11 Predicted to be involved in several processes, including protein kinase A signaling; regulation of cAMP-mediated signaling; and regulation of sperm capacitation. Located in acrosomal vesicle and sperm flagellum.

NR:

description
PREDICTED: T-complex protein 11 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU56337 True 538 lncRNA 0.54 3 26707269 26709577

Neighbor

gene id symbol gene type direction distance location
snrpc NA coding upstream 73617 26630429 ~ 26633652 (+)
pacsin1b LOC104965611,LOC103355721 coding upstream 121676 26550817 ~ 26585593 (+)
nudt3b nudt3 coding upstream 166307 26531513 ~ 26540962 (+)
LOC120557651 LOC107089162,LOC104944127,LOC103355802 coding upstream 537184 26129594 ~ 26170085 (+)
mybphb LOC103464713,LOC107089157 coding upstream 582531 26114854 ~ 26124738 (+)
slc2a1b slc2a1,LOC108231650,LOC104928076 coding downstream 80907 26790484 ~ 26815402 (+)
si:dkey-166d12.2 LOC100709810,LOC102797006,LOC102307918,LOC103355584 coding downstream 136273 26845850 ~ 26962727 (+)
lrig2 lrig2,LOC102799082 coding downstream 273683 26983260 ~ 27008409 (+)
LOC120556972 magi3,LOC103355560,LOC100702300,LOC101472626,LOC102212608 coding downstream 301821 27011398 ~ 27153146 (+)
im:7151449 NA coding downstream 449160 27158737 ~ 27169707 (+)
LOC120557964 NA non-coding upstream 302367 26400453 ~ 26404902 (+)
G41835 NA non-coding upstream 361810 26344137 ~ 26345459 (+)
G41834 LOC104955002 non-coding upstream 369065 26324805 ~ 26338204 (+)
G41827 LOC106518302,LOC101482215,LOC102196619,LOC102290668 non-coding upstream 431340 26275122 ~ 26275929 (+)
LOC120557409 NA non-coding upstream 455175 26222077 ~ 26252094 (+)
G41927 NA non-coding downstream 228900 26938477 ~ 26938745 (+)
LOC120558213 NA non-coding downstream 484595 27194172 ~ 27209333 (+)
G42020 NA non-coding downstream 515706 27225283 ~ 27227610 (+)
G42031 NA non-coding downstream 633022 27342599 ~ 27342850 (+)
G42061 NA non-coding downstream 710210 27419787 ~ 27432384 (+)
G41850 rps10,LOC102793608 other upstream 158470 26542507 ~ 26548799 (+)
G41825 NA other upstream 433954 26268602 ~ 26273315 (+)
LOC120558088 LOC104941431 other upstream 799531 25904769 ~ 25907738 (+)
LOC120558082 kcna10,LOC104941363 other upstream 834350 25767092 ~ 25872919 (+)
slc16a1a slc16a1,LOC102208676,LOC102781600 other upstream 1016334 25682407 ~ 25690935 (+)
ephb2b LOC104917933,LOC103376520 other downstream 961386 27670963 ~ 27823260 (+)
G42449 NA other downstream 2530836 29240413 ~ 29242253 (+)
ergic3 ergic3,LOC102788871 other downstream 3399958 30109535 ~ 30135834 (+)
G43045 NA other downstream 5750555 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 5761218 32470795 ~ 32471605 (+)

Expression


Co-expression Network