G42655 (pdhb)


Basic Information

Item Value
gene id G42655
gene name pdhb
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 29918763 ~ 29984988 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU57353
gtgtgtgtgtgtCTGTGCGTTTCATTTGCCAACATCttgcaaaaaaacattacaatctggagcatttttaaaaaggagccGTTTGGCTGTATTTACACATGGTTCAAACGTTTTTTACCGTCTGTGTGAACAAGACAAAGAAGGATTCAGGTGGGTTTGcctcgcgtgtgtgtgtgtgtgtgtgtttcagacatTGAGGGTCTTTTTAACAGAGAAGATGATGTCTTTGATCTGCGGCAGGCTGTTGTCCTCCAGGATTTTGGCATACGGCATGGGGATGTCGACGCCTGTCACCCTGGTGGCCGGAGCATCCAGGTAGTTGAAGGCAGGACCTTCCATGATCCTGGCGCAGATCTCCGCTCCAACCCCAAACTGCGGCCAGCCGCCCTCCACCGTCACCAGGTGGTTGGTCTTCATCACGCTGGTCTCAATACACTCCACATCCAGAGGACGGATGGTGCGCAGGTTGATCACCTCGCACTCGATTCCCTCCTTGGCGAGGACCACGGCGGCGTCCAGGCAGTGACTGACGTAGCGAGAGTGACTGACCAAAGAGACATGAGTCCCTTGTCTCTCCACCTTGGCCTTGCCGATGGGAATGGTGAAGTCTTTGGACTGGGACTCCTCTGACATCTCGAAGGGAACACCGTACATCAGCTCGTTCTCCAGGAAcaccaCAGGGTTGTCGTCTCTGATGGCTGATTTCAGGAGACCTTTGGCATCTTCTGCGTTCCAGGGACTCACAACCTTCAGGCCTGGACAGTGAGCgt

Function

symbol description
pdhb Enables pyruvate dehydrogenase activity. Acts upstream of or within pigmentation. Predicted to be part of mitochondrial pyruvate dehydrogenase complex. Is expressed in alar plate midbrain region; musculature system; optic tectum; optic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human PDHB (pyruvate dehydrogenase E1 subunit beta).

NR:

description
PREDICTED: pyruvate dehydrogenase E1 component subunit beta, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57353 True 770 lncRNA 0.53 6 29918763 29984988

Neighbor

gene id symbol gene type direction distance location
stab1 NA coding upstream 81297 29725512 ~ 29837466 (+)
nisch NA coding upstream 201423 29670469 ~ 29717340 (+)
hgh1 hgh1 coding upstream 261578 29639606 ~ 29657185 (+)
zgc:153675 LOC104941726,LOC100706129,LOC106954467,LOC103130791,LOC107080719,LOC105920322,LOC101469258,LOC103464637 coding upstream 282123 29630099 ~ 29636640 (+)
LOC120557724 cenpp,LOC104951285 coding upstream 322897 29485167 ~ 29595866 (+)
LOC120557789 NA coding downstream 101435 30086423 ~ 30088843 (+)
LOC120558110 LOC103358872,LOC102788290,LOC106565051,LOC100694607 coding downstream 107179 30092167 ~ 30098233 (+)
hesx1 NA coding downstream 117914 30102902 ~ 30106485 (+)
mych LOC103358868 coding downstream 209651 30194639 ~ 30198902 (+)
LOC120557912 NA coding downstream 369978 30354966 ~ 30377896 (+)
G42536 NA non-coding upstream 257337 29661206 ~ 29661426 (+)
LOC120557726 NA non-coding upstream 452101 29464818 ~ 29466662 (+)
G42453 LOC104927822 non-coding upstream 627018 29256755 ~ 29291745 (+)
G42441 NA non-coding upstream 690443 29225774 ~ 29228320 (+)
G42426 NA non-coding upstream 731049 29186974 ~ 29187714 (+)
G42672 NA non-coding downstream 6935 29991923 ~ 29994778 (+)
G42674 NA non-coding downstream 17685 30002673 ~ 30005924 (+)
G42675 NA non-coding downstream 24049 30009037 ~ 30010008 (+)
G42700 rpp14,LOC102775666,LOC103374991,LOC104948461 non-coding downstream 52009 30036997 ~ 30040399 (+)
G42727 NA non-coding downstream 150998 30135986 ~ 30137009 (+)
G42449 NA other upstream 676510 29240413 ~ 29242253 (+)
ephb2b LOC104917933,LOC103376520 other upstream 2095503 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 3154026 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 3369964 26542507 ~ 26548799 (+)
G41825 NA other upstream 3645448 26268602 ~ 26273315 (+)
ergic3 ergic3,LOC102788871 other downstream 124547 30109535 ~ 30135834 (+)
G43045 NA other downstream 2475144 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 2485807 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 3052946 33037934 ~ 33041311 (+)
G43277 NA other downstream 3202750 33187738 ~ 33212318 (+)

Expression


Co-expression Network