ergic3 (ergic3,LOC102788871)


Basic Information

Item Value
gene id ergic3
gene name ergic3,LOC102788871
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30109535 ~ 30135834 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU57445
CCGGAAGTGAAAGCGGAGGACTGATGTGTGTCTGGAGAGCAGGAACCTGTCGGTAACATTTGTGTTTAGCGGTGGTTTTCTGGATTAGAAAATGGACACGttaaataaactgaaacagTTTGACGCTTATCCCAAAACTCTGGAGGATTTCCGAGTGAAGACGTGGGGAGGAGCGACCGGTGAGAGGCTCTAATTTACccgggcagcagcagcagccattcAGACACCCTGGCTGTTAGCTGCTGCGGCTATCAACAAGGACCTGAAGCATTTCTCCTTTCAgtgataca
>XM_039797120.1
CTTGCGTGTCCCGGAAGTGAAAGCGGAGGACTGATGTGTGTCTGGAGAGCAGGAACCTGTCGGTAACATTTGTGTTTAGCGGTGGTTTTCTGGATTAGAAAATGGACACGttaaataaactgaaacagTTTGACGCTTATCCCAAAACTCTGGAGGATTTCCGAGTGAAGACGTGGGGAGGAGCGACCGGTCGCACCACCCTTCCATTCATCCTTCCCCTGCATTTCATAGTCCACCCTGAGCTGTACGTTGACACGTCGCGAGGAGACAAACTGAAAATCAACATCGACGTCATCTTCCCTCACATGCCCTGCGCCTATCTCAGTATAGATGCGATGGATGTGGCCGGTGAGCAGCAGTTGGACGTTGAACACAATCTGTTCAAACAGCGGCTGGACAAAGACCTGAAAGCTGTCACTCTCGAGGCAGAAAAACATGACCTTGGTATGGCTGACGATGGTGCAGTGTTTGACCCCAGTTCACTGGACCCAAACAGATGTGAGAGCTGCTACGGAGCTGAGACTGAAGACCTCAaatgctGTAACACCTGTGATGACGTGCGGGAGGCGTACCGGCGGCGAGGCTGGGCGTTCAAAAACGCCGACACCATCGAGCAGTGTAAGAGGGAGGGCTTCACACAGAGGATGCAGGAGCAGAAGAATGAAGGCTGCCAGGTTTACGGCTTCCTGGAAGTCAACAAGGTGGCAGGAAATTTCCACTTTGCTCCAGGAAAAAGTTTCCAGCAGTCTCATGTCCACGTGCACGCTGTGGAAATTCACGACCTACAGAGTTTCGGCTTAGACAACATAAACATGACCCATCTGATAAAACACCTGTCGTTTGGTAAAGACTACCCCGGCATCGTTAACCCTCTGGACGAGACGGACGTCACAGCGCCACAAGCATCAATGATGTACCAGTATTTTGTGAAAATAGTTCCTACCATCTATGTGAAAACTGATGGCGAGGTGGTAAAAACAAACCAGTTCTCGGTCACCAGGCATGAGAAAGTGGCCAACGGGCTAATAGGAGACCAGGGGCTGCCGGGCGTCTTTGTTTTATATGAGCTGTCACCCATGATGGTTAAATTCACAGAGAAACAAAGATCATTCACACACTTCCTAACAGGAGTTTGTGCCATTATTGGAGGTGTATTTACAGTGGCCGGTCTGATCGACTCATTCATCTATCACTCAGCTCGGGTCATCCAGAAGAAGATAGAGCTGGGCAAGGCTTCCTAACGCCCCCCCTCCCCGCTCACTAGCCTCCACGGTGCAAAACAGACCAAGACACggacacagaaagaaagaggcacagacagacagacagacagacagaccgacagacagacagacagagggagaagtTTGGA

Function

symbol description
ergic3 Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum; and membrane. Predicted to be integral component of Golgi membrane and integral component of endoplasmic reticulum membrane. Orthologous to human ERGIC3 (ERGIC and golgi 3).

NR:

description
endoplasmic reticulum-Golgi intermediate compartment protein 3 isoform X1

GO: NA

KEGG:

id description
K20367 ERGIC3, ERV46; endoplasmic reticulum-Golgi intermediate compartment protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU57445 False 290 lncRNA 0.50 1 30109545 30109834
XM_039797120.1 True 1372 mRNA 0.51 14 30109535 30135834

Neighbor

gene id symbol gene type direction distance location
hesx1 NA coding upstream 3050 30102902 ~ 30106485 (+)
LOC120558110 LOC103358872,LOC102788290,LOC106565051,LOC100694607 coding upstream 11302 30092167 ~ 30098233 (+)
LOC120557789 NA coding upstream 20692 30086423 ~ 30088843 (+)
LOC120557186 NA coding upstream 133544 29972493 ~ 29975991 (+)
stab1 NA coding upstream 272069 29725512 ~ 29837466 (+)
mych LOC103358868 coding downstream 58805 30194639 ~ 30198902 (+)
LOC120557912 NA coding downstream 219132 30354966 ~ 30377896 (+)
LOC120557913 NA coding downstream 253176 30389010 ~ 30407845 (+)
tomm34 tomm34,LOC102784590 coding downstream 293173 30429007 ~ 30442999 (+)
abraa LOC103364886,LOC100691009,LOC101485260 coding downstream 368860 30504694 ~ 30513488 (+)
G42700 rpp14,LOC102775666,LOC103374991,LOC104948461 non-coding upstream 69136 30036997 ~ 30040399 (+)
G42675 NA non-coding upstream 99527 30009037 ~ 30010008 (+)
G42674 NA non-coding upstream 103611 30002673 ~ 30005924 (+)
G42672 NA non-coding upstream 114757 29991923 ~ 29994778 (+)
G42655 pdhb non-coding upstream 124547 29918763 ~ 29984988 (+)
G42727 NA non-coding downstream 152 30135986 ~ 30137009 (+)
G42728 NA non-coding downstream 6548 30142382 ~ 30143273 (+)
G42726 NA non-coding downstream 7544 30143378 ~ 30144325 (+)
G42725 NA non-coding downstream 8623 30144457 ~ 30145125 (+)
G42752 NA non-coding downstream 175761 30311595 ~ 30312042 (+)
G42449 NA other upstream 867282 29240413 ~ 29242253 (+)
ephb2b LOC104917933,LOC103376520 other upstream 2286275 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 3344798 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 3560736 26542507 ~ 26548799 (+)
G41825 NA other upstream 3836220 26268602 ~ 26273315 (+)
G43045 NA other downstream 2324298 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 2334961 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 2902100 33037934 ~ 33041311 (+)
G43277 NA other downstream 3051904 33187738 ~ 33212318 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other downstream 3126361 33262195 ~ 33336767 (+)

Expression


Co-expression Network