XLOC_005090 (tlcd3bb)


Basic Information

Item Value
gene id XLOC_005090
gene name tlcd3bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3740605 ~ 3756405 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009889
CATCATCATATCAGGCAGACTTTATCCAAGCGCGTTTTTTTCAGCCTCGAAGGAAATAAACACATTCACGCGACGTCGAAAGATATCTATATGCTGGAGTGCGAAAAGCGGACCGAACCACCGCGTGTTTGACCTCCGGAGCTGATTTATTTACCTCAAAGACCGCGTGAAATAACCGCAAAAATCATGTCAGTGGATCCAACATGCACCCGGTGTTCGCTGCTGTGTTCTGCGGGGACGCGAGGCGCGACAGGCCGCTGACCGACACATTCGGGATCCGGACTGAGCTGCGCGGGGATTTTGTGAACGCAGTTTTGCCAGAGCTCATCTTCGAGGGACCATCATGTTGTCCATCATAGCTGCAGGGTCTGTGTTTTTCCCAGGCCTTTTCCTTTTGTCCAAACAGATGCTCAGATGCATCCCTGGACTGCAGTGGAATGAGGGAGACGCCACCATCGTTTCGGCCAGGTTGGTATCGTCTATCCAGGCGATTATGGCTTCTACGGCCGGATACATCATCTCCTCTTCCTGCCAGGACATCATCGAGGACCAGCATTGGCTGACCAGCTCCTACATCCTGTTCGCTGTGCCGTATTTCGTGTATGACATCTACGCCATGTTCCTGTGTTACTGGCACAAGCTCCAGGTCAAAGGGCACGAGGTGGACAACGGCTCCAAATCCAAGGCTACAGCCATCGCCGGATACCTGCGCAGAGAGTTCCTCATGGTCCTACACCACGTGGTCATGGTCACCGTCTGCTTCCCCGTCTCTGTGTTCTGGAGGCAAGGGAAGGGCGATTATATCCAGGGTGTCATGTTCCTGGCTGAACTCAGCACACCGTCCGTCTGTCTAGGCAAGATCCTCATCCAGTACAAGCAACAGCACACACTTCTTCACAAAGTGAATGGAGCTGTAATGCTGATCACTTTCTTCCTCTGTCGAGTCCTTCTCTTCCCCTATCTCTACTACATTTATGGAAGATATGCCTCCATTCCCTTTTACCTGGTCCCTTTCTCGGTGCCATGGCAGTGTAATCTCGGCGCATCGCTCCTCATGGCTCCACAGGTCTACTGGTTCTCTCTGATCTGCAGAGGAGCTCTGCGCCTGTTCACCGGCAGGTCCTCGCACTCCCGCAAACCTCCGGTTAAGCCTGACTGTGAAGGACACGAGACAGCCAATGGATACAGCACACGGATGGTGGGTCGGGACACGCCCACAATGGCACACTAAAAAGGGAGGGGCTTATGCAAATGAGACTAAGCAATGAAGAAAGACAATTGGATGAGTGATTTACTGAAATAGACTAGACGCCCTGTAACCAATCACAGCACAGCATTACGTTTAGTTACAGGGCTCACGTACTGTATATAAGA
>TCONS_00009890
ATGTTGTCCATCATAGCTGCAGGGTCTGTGTTTTTCCCAGGCCTTTTCCTTTTGTCCAAACAGATGCTCAGATGCATCCCTGGACTGCAGTGGAATGAGGGAGACGCCACCATCGTTTCGGCCAGGTTGGTATCGTCTATCCAGGCGATTATGGCTTCTACGGCCGGATACATCATCTCCTCTTCCTGCCAGGACATCATCGAGGACCAGCATTGGCTGACCAGCTCCTACATCCTGTTCGCTGTGCCGTATTTCGTGTATGACATCTACGCCATGTTCCTGTGTTACTGGCACAAGCTCCAGGTCAAAGGGCACGAGGTGGACAACGGCTCCAAATCCAAGGCTACAGCCATCGCCGGATACCTGCGCAGAGAGTTCCTCATGGTCCTACACCACGTGGTCATGGTCACCGTCTGCTTCCCCGTCTCTGTGTTCTGGAGGCAAGGGAAGGGCGATTATATCCAGGGTGTCATGTTCCTGGCTGAACTCAGCACACCGTCCGTCTGTCTAGGCAAGATCCTCATCCAGTACAAGCAACAGCACACACTTCTTCACAAAGTGAATGGAGCTGTAATGCTGATCACTTTCTTCCTCTGTCGAGTCCTTCTCTTCCCCTATCTCTACTACATTTATGGAAGATATGCCTCCATTCCCTTTTACCTGGTCCCTTTCTCGGTGCCATGGCAGTGTAATCTCGGCGCATCGCTCCTCATGGCTCCACAGGTCTACTGGTTCTCTCTGATCTGCAGAGGAGCTCTGCGCCTGTTCACCGGCAGGTCCTCGCACTCCCGCAAACCTCCGGTTAAGCCTGACTGTGAAGGACACGAGACAGCCAATGGATACAGCACACGGATGGTGGGTCGGGACACGCCCACAATGGCACACTAA

Function

symbol description
tlcd3bb Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process and lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TLCD3B (TLC domain containing 3B).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110603-2 Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process and lipid homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human TLCD3B (TLC domain containing 3B).

Ensembl:

ensembl_id ENSDARG00000074564

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009889 False 1374 mRNA 0.52 7 3740605 3756405
TCONS_00009890 True 888 mRNA 0.54 6 3740748 3753131

Neighbor

gene id symbol gene type direction distance location
XLOC_005089 vps25 coding downstream 18648 3714076 ~ 3721957 (-)
XLOC_005088 CABZ01069040.1 coding downstream 34743 3652015 ~ 3705862 (-)
XLOC_005087 NA coding downstream 170524 3569747 ~ 3570081 (-)
XLOC_005086 NA coding downstream 196589 3519168 ~ 3544016 (-)
XLOC_005085 TANC2 coding downstream 287016 3314504 ~ 3453589 (-)
XLOC_005091 MAZ coding upstream 10152 3766557 ~ 3778848 (-)
XLOC_005092 NA coding upstream 26216 3782621 ~ 3786382 (-)
XLOC_005093 taok2b coding upstream 32709 3789114 ~ 3840664 (-)
XLOC_005094 NA coding upstream 104059 3860464 ~ 3865234 (-)
XLOC_005095 gdpd3b coding upstream 136627 3893032 ~ 3904011 (-)
XLOC_005083 NA non-coding downstream 455696 3281756 ~ 3284909 (-)
XLOC_005073 NA non-coding downstream 995964 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 1071105 2625669 ~ 2669500 (-)
XLOC_005102 NA non-coding upstream 333332 4089737 ~ 4129820 (-)
XLOC_005103 NA non-coding upstream 387189 4143594 ~ 4169699 (-)
XLOC_005105 NA non-coding upstream 433617 4190022 ~ 4194304 (-)

Expression


Co-expression Network