LOC120556663


Basic Information

Item Value
gene id LOC120556663
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 31565448 ~ 31569609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU57747
ACCACTATTCAACGGACAAGTGTCGACAGCAAagcatattttccctcttatTTATCGCATTGTAGCAATGTACAACCCTTGAGGACCTTGAAAAGTCAAATGCACCTTTGCTTGACTACTTGGCCAATGCAGGATGTCTGAGGCCTATGCGGTCGATAAGAGACAGGGATCTGCTGAAATTGTCATGTTTCAGGTCATCCACAGAGTTCAAAGTCCATTTCAAAGGTATTCAGTGTTAGTTGTTGTACAGTCAGATCAATCTCAAAAGGAGTCATAATTTTAACCATTGACCAACAAGGTGTAAGACTAGCTTCACAAAATCTATTGTGTTTGTATAAAACCAAGGGACAATTTGACAGTGTACAATTGAATTATGGATTGCACAATTATTCCATGTTGTTTGTACAGATTCTGTGAAGGACTGAAAACTCTTTGGGTTCAGGACCAAATACGACGACATCCAGACAGCTTTCGACCCCTGTTCTGCTATGAGCTGTGGATGATCTTTTCAGCATTCGTCTCTCTCCAGAAGGGAGCAACAAGAGAGCTGCTGACGAGATGGTCGTTACTTTCTGGAGGGACTATCTCCAAAATGCAGAGGaaGAAGAAGGGCCATCCAAACTAGAGAAGATATTGGCCTTCACAACTTGAGCATCTGACCAGTTCATTCACAAAGGAGATGATGGCTTCTCTACATCAATGTTCCCTCTTGCCAACAGATGTGTTAACTGCATCAACTTGCCACTACATGTGTCTTACCAACTGTTCAAGGAGAAGTTTGACTTTGCATTAGGGAACACATATGGGTTTGGCAGGGCATGAACATGTCATGCTCTGAaaactgtttctgtctgtgtctcactttctctgtttcaaacaAGAGTTATTATTTTCACTTCTGAATGCCGTATGCAATATAActtatgtattttatatagtTTCACCACGATTCAGTTGACTCAGTCAGCCTatgttttaaaacatatttacattttaacggCATGTTTCATATTTTTACCAAACTTTTTACcaaatgttaattt
>XR_005638884.1
TCTTGGACATCAGCCACGAGGTGGAAAAGGACTGGGACCACCAGACTGTTTTAGAACGCATCAGGGATGGCTTTGGTGAGCACCTTCCAGACGATGTCAGCTATAAGAGAGGACTGGTAATACATTGCTGGCAAAGCCATTGCTGTGAGCTTGGTACATGGCGGTCCACCACCAAACTTCCTCTCTCAGACATAGCTGACACAGAACTCTTGGAAAAGTCAAAAAGATTCTGTGAAGGACTGAAAACTCTTTGGGTTCAGGACCAAATACGACGACATCCAGACAGCTTTCGACCCCTGTTCTGCTATGAGCTGTGGATGATCTTTTCAGCATTCGTCTCTCTCCAGAAGGGAGCAACAAGAGAGCTGCTGACGAGATGGTCGTTACTTTCTGGAGGGACTATCTCCAAAATGCAGAGGaaGAAGAAGGGCCATCCAAACTAGAGAAGATATTGGCCTTCACAACTTGAGCATCTGACCAGTTCATTCACAAAGGAGATGATGGCTTCTCTACATCAATGTTCCCTCTTGCCAACAGATGTGTTAACTGCATCAACTTGCCACTACATGTGTCTTACCAACTGTTCAAGGAGAAGTTTGACTTTGCATTAGGGAACACATATGGGTTTGGCAGGGCATGAACATGTCATGCTCTGAaaactgtttctgtctgtgtctcactttctctgtttcaaacaAGAGTTATTATTTTCACTTCTGAATGCCGTATGCAATATAActtatgtattttatatagtTTCACCACGATTCAGTTGACTCAGTCAGCCTatgttttaaaacatatttacattttaacggCATGTTTCATATTTTTACCAAACTTTTTACcaaatgttaatttatttttcata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57747 True 1043 lncRNA 0.40 2 31568266 31569599
XR_005638884.1 False 871 lncRNA 0.42 5 31565448 31569609

Neighbor

gene id symbol gene type direction distance location
zgc:171566 ggh,LOC108243634,LOC102781709,LOC100692082,LOC107384984 coding upstream 147956 31377980 ~ 31417492 (+)
LOC120558103 slc6a6,LOC103364884 coding upstream 691942 30821681 ~ 30873506 (+)
lsm3 lsm3,LOC100705055 coding upstream 879913 30679316 ~ 30685535 (+)
abraa LOC103364886,LOC100691009,LOC101485260 coding upstream 1051960 30504694 ~ 30513488 (+)
tomm34 tomm34,LOC102784590 coding upstream 1122449 30429007 ~ 30442999 (+)
rspo4 LOC103374720,LOC103367962 coding downstream 811073 32380682 ~ 32444324 (+)
ripor3 LOC100693168,LOC104944097 coding downstream 1077990 32647599 ~ 32730753 (+)
psmf1 psmf1 coding downstream 1250361 32819970 ~ 32834491 (+)
cand2 LOC100694792,LOC102304752,LOC101484714,LOC108244949 coding downstream 1432494 33002103 ~ 33033297 (+)
LOC120557808 NA coding downstream 1777182 33346791 ~ 33348566 (+)
G42962 NA non-coding upstream 117058 31448009 ~ 31448390 (+)
LOC120556847 NA non-coding upstream 123320 31438263 ~ 31442128 (+)
G42956 NA non-coding upstream 136493 31428735 ~ 31428955 (+)
G42953 NA non-coding upstream 145857 31418426 ~ 31419591 (+)
G42951 NA non-coding upstream 163001 31402084 ~ 31402447 (+)
G42986 NA non-coding downstream 66369 31635978 ~ 31636937 (+)
G42989 NA non-coding downstream 129169 31698778 ~ 31761431 (+)
LOC120558237 NA non-coding downstream 211868 31781477 ~ 31787872 (+)
G43037 NA non-coding downstream 783477 32353086 ~ 32353560 (+)
G43044 NA non-coding downstream 890055 32459664 ~ 32459875 (+)
ergic3 ergic3,LOC102788871 other upstream 1429614 30109535 ~ 30135834 (+)
G42449 NA other upstream 2323195 29240413 ~ 29242253 (+)
ephb2b LOC104917933,LOC103376520 other upstream 3742188 27670963 ~ 27823260 (+)
anks1ab tcp11,LOC103355682,LOC103134623,LOC101477444,LOC102192099,LOC103464730,LOC107089148,LOC106918244 other upstream 4800711 26652851 ~ 26764737 (+)
G41850 rps10,LOC102793608 other upstream 5016649 26542507 ~ 26548799 (+)
G43045 NA other downstream 890523 32460132 ~ 32460863 (+)
G43051 LOC102201960 other downstream 901186 32470795 ~ 32471605 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other downstream 1468325 33037934 ~ 33041311 (+)
G43277 NA other downstream 1618129 33187738 ~ 33212318 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other downstream 1692586 33262195 ~ 33336767 (+)

Expression


Co-expression Network