G43680 (setd5)


Basic Information

Item Value
gene id G43680
gene name setd5
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34766647 ~ 34861950 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU58626
gaatttggagaaaaataaaacttatatATATGACAAGATGAATGCAGCCATATGTGGGGAACATAACTGGATTTCATATTTATTGGAAAAACAAGAATGCAGCACCATGAATCATAAGACTTGTATGTCTCAAGTACAATATCAGAGGTTTACAGCGAAGTAGTCCTAATGTGAAATCAAAACAGTTCAGTGGGGATGAGAGAACAGAAAAgaaccaaaacaaaacattggaaCCAACTGAGAACCTCAAGAAAAAAGGGCTGTTGTCATGTTTAGTGAGAGAACACGGAAGCTGGCAATCACATGGAATGATCCTATCCAGGGAGAACCCCTCCTCCCCACCTTTCTAATTCATCTTTAGAACGGATGATTAACATGGCGTCTTTGCTTGCATCATTTCCTAATCAAACACTTATTTACTGCAGCACAGACTCGGCCCCTTGCCAAATCAAAAGTAAcattgacaaaaataaaataaaaaaataaaacaattcttGCTTTCAGTTACATATGCATTTATCCAACCTGGGTACCATGGCGAGAGGTAcgtcttttaataactttgtacagacatttgtGTGGAAAGTTTTACTTTCCGACATTATAGAGCCTGTTTGCACAGTCCGGCACATGAGGAAAAACGGGAAAATTTCAAGTTACATGtgatttcttgtttgtttttagaaTGTGTCATCCCAATCGCTTTTTCCACTGATTCTGTAATGATGTCCAAAGTCAAAGACTAGCTTTGTGCAGAATGTggtcatttgatttttttttcggaaaagagagagaagaaaaaaagaaaaagaaaaaaaaaagaaacggagAAATTCTTAAAGAAGTCCTTGCTCCTCTTAGGTCTGTACATTTCCCCTCCCCAAACTCCCTGCTCCCCATTTAAGGGGGTACGCagcttcatacacacacactctcactctctcactctctcactctctcacacacacacaccacacacacaccacacacacaaacaaacaaacaaacaaacaaatgtccTAAAAGCTTCCTGACTGTGTCCTTACTCCAGGTCCCTGAAGGGGGGAGTGCTGGAACTGACTGAGGCTTGTCCCTCGCTGTGGGTAGTGTGTCGGTCCAGTGGCCGACAGCAACCTGGAGCCAGCCTGCAGCGCCGCCTGGCCCGGACTGCCGGACTTCAGACTGCGAGACACCTGCTGTTGACACTCTCTGGAGGCATGGGCGCCCGAGTCTATCTTAGTCTGCCCGTGGGACCTGTGTCCCGGTGTGGGAGTCCCTACCAGGCTGCTGCTGTTCAAAAGGCTCGCTTTTAAGGGGCTGCTGTAGCCATGACCTCCATCCAAGTTACTGCTGCCACTTTGCTGGTTTAGAGAGCACGCTGGCGGCCTGGAGTctgaggaggaggtgggggtgCCACTAGGGTAAGAGGATGGAGGGTGGTCCTGCAACACTTCAGGGTGAGAGGTGGAGAGGCGTGGGTAAAAGCTCTGGCCTGATGAGGGACTGTAGGAACCCCGGAATGGAGAGTTGGAGGTTTGCTGGAGGAACGACGGGCTGTCTGCCTGCCGGTGGCTTTCTGATGActgaacacacaaaacacacccaCTTAATATTTAGT
>TU58628
aaaaacacacacacaccacacacacaccacacacacacaaacaaacaaacaaacaaacaaatgtccTAAAAGCTTCCTGACTGTGTCCTTACTCCAGGTCCCTGAAGGGGGGAGTGCTGGAACTGACTGAGGCTTGTCCCTCGCTGTGGGTAGTGTGTCGGTCCAGTGGCCGACAGCAACCTGGAGCCAGCCTGCAGCGCCGCCTGGCCCGGACTGCCGGACTTCAGACTGCGAGACACCTGCTGTTGACACTCTCTGGAGGCATGGGCGCCCGAGTCTATCTTAGTCTGCCCGTGGGACCTGTGTCCCGGTGTGGGAGTCCCTACCAGGCTGCTGCTGTTCAAAAGGCTCGCTTTTAAGGGGCTGCTGTAGCCATGACCTCCATCCAAGTTACTGCTGCCACTTTGCTGGTTTAGAGAGCACGCTGGCGGCCTGGAGTctgaggaggaggtgggggtgCCACTAGGGTAAGAGGATGGAGGGTGGTCCTGCAACACTTCAGGGTGAGAGGTGGAGAGGCGTGGGTAAAAGCTCTGGCCTGATGAGGGACTGTAGGAACCCCGGAATGGAGAGTTGGAGGTTTGCTGGAGGAACGACGGGCTGTCTGCCTGCCGGTGGCTTTCTGATGATGGAGTGAGTACACAGAGGGACTGTATCCGTGTGGACTCTTCATGGGAGAAGCCATGGACGCTGCCTGCATCTCATATTGATCTGCATCAGATTCCTTCTCTGTAGAGCCATCACTCCTCTTGTGAATCCGCTCCATCTTGATGCTTCTTAGCACTCGCTCCAGGACCCCTTGACCTTCCCTTAAACGTTCAACAGTAGTGGGGACCATCCACTGGTTGTTGCTGTCCTGGCGTCTGGACTGCACTGAAGAGCCCTGCTGGTCTGGAGGACTGACCTCCTCTATTTGTGGGATGGAGAAAGTGTGTgctgaggaagagaaggagcTGTGTTGGGAGGCTGGGGGCTGCATCTGCTGATGGCAATGGGGATGATGGGAGTCCTGGCTGTAGTGGGAGCCAGGCCTGGTGGGGGTACCACCCAGAGACGAGCTGCTGCCGGCTGGGTCTGAGTCGCGGCCCTGTTTCCTCTTGCGGTACTCCAGCAAAGA
>TU58629
gaatttggagaaaaataaaacttatatATATGACAAGATGAATGCAGCCATATGTGGGGAACATAACTGGATTTCATATTTATTGGAAAAACAAGAATGCAGCACCATGAATCATAAGACTTGTATGTCTCAAGTACAATATCAGAGGTTTACAGCGAAGTAGTCCTAATGTGAAATCAAAACAGTTCAGTGGGGATGAGAGAACAGAAAAgaaccaaaacaaaacattggaaCCAACTGAGAACCTCAAGAAAAAAGGGCTGTTGTCATGTTTAGTGAGAGAACACGGAAGCTGGCAATCACATGGAATGATCCTATCCAGGGAGAACCCCTCCTCCCCACCTTTCTAATTCATCTTTAGAACGGATGATTAACATGGCGTCTTTGCTTGCATCATTTCCTAATCAAACACTTATTTACTGCAGCACAGACTCGGCCCCTTGCCAAATCAAAAGTAAcattgacaaaaataaaataaaaaaataaaacaattcttGCTTTCAGTTACATATGCATTTATCCAACCTGGGTACCATGGCGAGAGGTAcgtcttttaataactttgtacagacatttgtGTGGAAAGTTTTACTTTCCGACATTATAGAGCCTGTTTGCACAGTCCGGCACATGAGGAAAAACGGGAAAATTTCAAGTTACATGtgatttcttgtttgtttttagaaTGTGTCATCCCAATCGCTTTTTCCACTGATTCTGTAATGATGTCCAAAGTCAAAGACTAGCTTTGTGCAGAATGTggtcatttgatttttttttcggaaaagagagagaagaaaaaaagaaaaagaaaaaaaaaagaaacggagAAATTCTTAAAGAAGTCCTTGCTCCTCTTAGGTCTGTACATTTCCCCTCCCCAAACTCCCTGCTCCCCATTTAAGGGGGTACGCagcttcatacacacacactctcactctctcactctctcactctctcacacacacacaccacacacacacacacacaaacaaacaaacaaacaaacaaatgtccTAAAAGCTTCCTGACTGTGTCCTTACTCCAGGTCCCTGAAGGGGGGAGTGCTGGAACTGACTGAGGCTTGTCCCTCGCTGTGGGTAGTGTGTCGGTCCAGTGGCCGACAGCAACCTGGAGCCAGCCTGCAGCGCCGCCTGGCCCGGACTGCCGGACTTCAGACTGCGAGACACCTGCTGTTGACACTCTCTGGAGGCATGGGCGCCCGAGTCTATCTTAGTCTGCCCGTGGGACCTGTGTCCCGGTGTGGGAGTCCCTACCAGGCTGCTGCTGTTCAAAAGGCTCGCTTTTAAGGGGCTGCTGTAGCCATGACCTCCATCCAAGTTACTGCTGCCACTTTGCTGGTTTAGAGAGCACGCTGGCGGCCTGGAGTctgaggaggaggtgggggtgCCACTAGGGTAAGAGGATGGAGGGTGGTCCTGCAACACTTCAGGGTGAGAGGTGGAGAGGCGTGGGTAAAAGCTCTGGCCTGATGAGGGACTGTAGGAACCCCGGAATGGAGAGTTGGAGGTTTGCTGGAGGAACGACGGGCTGTCTGCCTGCCGGTGGCTTTCTGATGATGGAGTGAGTACACAGAGGGACTGTATCCGTGTGGACTCTTCATGGGAGAAGCCATGGACGCTGCCTGCATCTCATATTGATCTGCATCAGATTCCTTCTCTGTAGAGCCATCACTCCTCTTGTGAATCCGCTCCATCTTGATGCTTCTTAGCACTCGCTCCAGGACCCCTTGACCTTCCCTTAAACGTTCAACAGTAGTGGGGACCATCCACTGGTTGTTGCTGTCCTGGCGTCTGGACTGCACTGAAGAGCCCTGCTGGTCTGGAGGACTGACCTCCTCTATTTGTGGGATGGAGAAAGTGTGTgctgaggaagagaaggagcTGTGTTGGGAGGCTGGGGGCTGCATCTGCTGATGGCAATGGGGATGATGGGAGTCCTGGCTGTAGTGGGAGCCAGGCCTGGTGGGGGTACCACCCAGAGACGAGCTGCTGCCGGCTGGGTCTGAGTCGCGGCCCTGTTTCCTCTTGCGGTACTCCAGCAAAGA

Function

symbol description
setd5 Acts upstream of or within heart development and larval locomotory behavior. Is expressed in head. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 23. Orthologous to human SETD5 (SET domain containing 5).

NR:

description
PREDICTED: SET domain-containing protein 5 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58626 False 1618 lncRNA 0.46 3 34858790 34860468
TU58628 False 1117 lncRNA 0.57 6 34766647 34861950
TU58629 True 2068 lncRNA 0.48 5 34858790 34861950

Neighbor

gene id symbol gene type direction distance location
LOC120557093 NA coding upstream 395553 34370229 ~ 34371094 (+)
LOC120557827 NA coding upstream 699305 34047432 ~ 34067342 (+)
znf831 NA coding upstream 726364 34026311 ~ 34040283 (+)
barx1 barx1 coding upstream 1001139 33760090 ~ 33765508 (+)
LOC120557830 LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799 coding upstream 1248523 33516838 ~ 33518124 (+)
LOC120557490 NA coding downstream 142992 35004942 ~ 35006128 (+)
ube2v1 LOC103133159,LOC106912622,LOC102222270,LOC103465507,LOC104930303,LOC106519068 coding downstream 301534 35163484 ~ 35199996 (+)
LOC120556883 LOC104930311,LOC103370811,LOC104960357,LOC100711115,LOC101474327 coding downstream 413147 35275097 ~ 35278434 (+)
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding downstream 454527 35316477 ~ 35319169 (+)
LOC120557477 LOC103375199,LOC104930306,LOC101473264,LOC108251201 coding downstream 564411 35426361 ~ 35452319 (+)
G43652 NA non-coding upstream 103798 34662357 ~ 34662849 (+)
G43627 NA non-coding upstream 119489 34602206 ~ 34647158 (+)
G43620 NA non-coding upstream 199026 34567311 ~ 34567621 (+)
G43613 NA non-coding upstream 299299 34466866 ~ 34467348 (+)
G43600 NA non-coding upstream 365839 34400375 ~ 34400808 (+)
G43700 setd5 non-coding downstream 18774 34880724 ~ 34884979 (+)
G43719 NA non-coding downstream 72366 34934316 ~ 34938283 (+)
G43722 NA non-coding downstream 76445 34938395 ~ 34938594 (+)
G43723 NA non-coding downstream 79241 34941191 ~ 34941440 (+)
G43729 LOC100711384,LOC101475072,LOC102214007,LOC103373511 non-coding downstream 98703 34960653 ~ 34962183 (+)
G43656 NA other upstream 99465 34665236 ~ 34667182 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 1420841 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 1429880 33262195 ~ 33336767 (+)
G43277 NA other upstream 1554329 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 1725336 33037934 ~ 33041311 (+)
LOC120556915 NA other downstream 601822 35463772 ~ 35486235 (+)
G43924 NA other downstream 802193 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 1100589 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 1841305 36703255 ~ 36711295 (+)
plekha6 plekha6 other downstream 3098756 37960706 ~ 38096072 (+)

Expression


Co-expression Network