G43687


Basic Information

Item Value
gene id G43687
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 34795463 ~ 34825540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU58638
TAGAACTCTCTGAAATAGGAGTAGTCATGGCAACTTTAACCGCAGTTGGTCATGTGATCTGATCCCTGACATGTTAAGCTGTTGCTGTGACATGACTAtgtgtgactgtttgtgtggttgtgagtgtgtagttgtgtgtgtggttgtgtttgtgtatatctctgtgtggttgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU58642
TTTacatcaaaatgtaggaaatcttgtgccCTTTCTAACAATCTGCTCAGGGAGGCAATACGACTTTCACACTAGGCACAGTGAGCTTCCAAGTGAAGCCATCTCCACCAACTGCCGCACTGCCTCCTGTACTAAATCCTACCAGAAATgccaggaggagaagagaaacaggcccttttcagacagctgctgtcctcacatttcttacaccacacacaccattctTGGACAGGATGATCAGCAGGTtgttatgtctctcacagtatCAAACATTAAGAGATAGGAGTTACGGTTTTTGAGCTAGGAGCAGGACTATCAAAGGTGCATCAGAGCTTTGTTTCTGTGAGAAGGCCTCACTGAGACAAGAGTCGTCATAGCAACCTTTAACTGCAGTTGGTCCCTGTCATGTTGACCAATGGTGTGAAGCTACTGTTCCTAGTCTACTCCTCTCCTGTCATCCTTttcccttctcttctccttttcctcttcctaTATTCCTCTCTTCGTCTGTTTgtatgtcttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU58645
gtgtgtgtgtgtctctctctctgtgtgtgtttgtgtgtgtgtgtctgtgtgtgtgtttccgtctctctttgtctgtgtgtgtgtgtgtgtgtgtgtctctttgtctgtggttgtgtgtctctctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU58647
ctctacttctctcctccttttctcttctcctcttcctctcttctcatcttcctgtgtctgtatgtgtgtgtaactcctttcctttcttcctctcttccttctctacttctctcctcctttctcttctcctcttcctctcttctcatcttcctgtgtctgtatgtgtgtgtaactcctttcctttcttcctctcttccttctctacttctctcctccttttctcttctcctcttcctctcttctcatcttcctgtgtctgtatgtgtgtaactCCTCtcatttcttcttctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU58648
ctctacttctctcctccttttctcttctcctcttcctctcttctcatcttcctgtgtctgtatgtgtgtgtaactcctttcctttcttcctctcttccttctctacttctctcctcctttctcttctcctcttcctctcttctcatcttcctgtgtctgtatgtgtgtgtaactcctttcctttcttcctctcttccttctctacttctctcctccttttctcttctcctcttcctctcttctcatcttcctgtgtctgtatgtgtgtaactCCTCtcatttcttcttctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtctctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58638 False 277 lncRNA 0.45 2 34818582 34825540
TU58642 True 656 lncRNA 0.46 2 34821340 34825540
TU58645 False 254 lncRNA 0.48 3 34796010 34825540
TU58647 False 420 lncRNA 0.45 3 34795463 34825540
TU58648 False 420 lncRNA 0.45 3 34795613 34825540

Neighbor

gene id symbol gene type direction distance location
LOC120557093 NA coding upstream 424369 34370229 ~ 34371094 (+)
LOC120557827 NA coding upstream 728121 34047432 ~ 34067342 (+)
znf831 NA coding upstream 755180 34026311 ~ 34040283 (+)
barx1 barx1 coding upstream 1029955 33760090 ~ 33765508 (+)
LOC120557830 LOC105888650,LOC105896821,LOC101068541,LOC103395674,LOC106527799 coding upstream 1277339 33516838 ~ 33518124 (+)
LOC120557490 NA coding downstream 179402 35004942 ~ 35006128 (+)
ube2v1 LOC103133159,LOC106912622,LOC102222270,LOC103465507,LOC104930303,LOC106519068 coding downstream 337944 35163484 ~ 35199996 (+)
LOC120556883 LOC104930311,LOC103370811,LOC104960357,LOC100711115,LOC101474327 coding downstream 449557 35275097 ~ 35278434 (+)
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding downstream 490937 35316477 ~ 35319169 (+)
LOC120557477 LOC103375199,LOC104930306,LOC101473264,LOC108251201 coding downstream 600821 35426361 ~ 35452319 (+)
G43652 NA non-coding upstream 132614 34662357 ~ 34662849 (+)
G43627 NA non-coding upstream 148305 34602206 ~ 34647158 (+)
G43620 NA non-coding upstream 227842 34567311 ~ 34567621 (+)
G43613 NA non-coding upstream 328115 34466866 ~ 34467348 (+)
G43600 NA non-coding upstream 394655 34400375 ~ 34400808 (+)
G43691 NA non-coding downstream 32363 34857903 ~ 34894774 (+)
G43700 setd5 non-coding downstream 55184 34880724 ~ 34884979 (+)
G43719 NA non-coding downstream 108776 34934316 ~ 34938283 (+)
G43722 NA non-coding downstream 112855 34938395 ~ 34938594 (+)
G43723 NA non-coding downstream 115651 34941191 ~ 34941440 (+)
G43656 NA other upstream 128281 34665236 ~ 34667182 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 1449657 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 1458696 33262195 ~ 33336767 (+)
G43277 NA other upstream 1583145 33187738 ~ 33212318 (+)
LOC120556790 LOC104958239,LOC105940397,LOC103464819,LOC103150142,LOC106923340 other upstream 1754152 33037934 ~ 33041311 (+)
LOC120556915 NA other downstream 638232 35463772 ~ 35486235 (+)
G43924 NA other downstream 838603 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 1136999 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 1877715 36703255 ~ 36711295 (+)
plekha6 plekha6 other downstream 3135166 37960706 ~ 38096072 (+)

Expression


Co-expression Network