LOC120556868


Basic Information

Item Value
gene id LOC120556868
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 35557651 ~ 35560888 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU58886
TCTGAATACTTGATTACTGTTCAATACCGTGAATACTGTTGGTGTCCTCCAATAATAGGACCAAAGGTTATTGAATGATTAGCTGCTCAGATGTTTGAGGACAAGTTTTTTTCATTGCCTTCCATTATTTGAGGAGCAGAAGAGCTTACAGGCCCTGCGCGGTGTTTCCACTTCCACTGCCTGATTAGACCTCTcttctgtgtggTGGCAAGAGGCGTGGCTTCGAGGAAGTAGGTCAAGGGGTGTGCACAGCTGCAGCGCATTCCATGATTCACCTCAGCAGTACATACCCGGGCTGATCACCCCATTGGCGCCAGATCCTTACAACTACCTGTGTGCTCCATGCTGCTCTGTCCTCCATGCTTGGATTCCTCTATGAATCAGAGTggactctcctctgcctgcctgGCCTCGAGTCTCGGTCCAGTCCTGGATTCTCCGCTGCCTGACCTCCTCGAGCTTCGGTCCAGCCTCGAGCTATCCTGCTCGGACTCTGCCTTCATTGTTCCCTCTAAGTTCATACTGTTCATTAAAACACCTTTTAAC
>XR_005638902.1
gtgtgtgtgtgtgtgtctgtgtgtgtgtatcttgttTGCAGCTCCAAAGAATCCCTACATAGAACTGGCAGAAACAATCATGGGTATTTGTCTCCACCTAGTGGttggtatatattttaaatacagTGATGATGAGCAGCACTTCTTTCAGTACTGTATTTTCTACACAAGCACTCTTTAAAGAGCCGCTATTATAgtagaatatgtttacatgctttgatgttcaaacaCATACTATGTTTCTCATACTCATGTTTGCTGCAGCTCTGCCTGAAACACTGTCTGAGCTCTTGGCTCTCCTTCCTGAAAAACACAGtttattgtgtattgtttattgtttattaaggatccccattagtcaTCACCATAGTGAAAAgtattcttcctggggtccaacaCAAGACAATATACAATTATTACAAAGGAAATTATAAATACATATTGTTATATCAGAACAATGAAAACATCCCAAATATTATAAAACAAAAGGCACAGTAGCATGTTTTCCAtgttataaaaacaacaaaacagtaacatgaaataaaatatatagtgAAGAAGCAAGAAAGAAGACAACAGAAAGGAATGACAGAAACAGGTTTTAACCTAATCTCTGATAACAGCTTCtcttagtttgttttttaagcttGAAGTATTTCACATTATGATTAAATGTGAGGGGAAGCTGTTCCAATATGTTATAGTTCTGTacataaaaattttttttaagcacATCGGTTCTGGGCATAGGCAGCCATAACCCACCTAACATAAAACATAACCATGGTATCATAACTATGACGACCATTGGTAGCTGTGAGAACAAGCTGTTGGGTTTGCATAATGTACaaatattctttaaaaataCAATCAGGCTGCAGCTAGTCTTTCATCTACTGTCATCCATGACAGCCTGCTATGCATTTTTTCCACATTACTTCTTTTGGAGCAGCGCAATTTGATAAGCTCTTGTTTTGAGGCACCAGACCAGATTATAGGGCAATAGTCCAGAGACTGTCCCatcagtctgctctgattggtcagctggcccactaTCTTGTGATTGGGGAATATTAGCCATCTTTTGGCTGTGTATTTAGCACATTGGTTTTGAAATGTAACAGTGACTACAAGGttaaaagttaaagttaaaagcTCAACTTTAATTTGCAGAAGCTACATGTATCAGATAATGAACTGTGAtgctggaaagtaactaagaaaaaataaataaaagtaactaagtacatttcccACTTACTATgcttacttgagtatttccattgttTTTAGTATATAAAAAACCAACCCTGAGCATATTATACAATATGATGCATTGTATTATAGTAAATGAAACCAGCAGTGTTTAAGGTATTAGATTACTGCATACTTGCGGTACTTTTCTAACAATGATATGACATGTTATGATTGAATGACAGATTACATAGTAGTATAGCCACTTttaggcagggttggtaactatttccaatatacactttctatatattgtttgaaatggtcaTGTAGCTGCTAGCAGACAATATTATAATCTTGTAAAATCGTCCACCAATCCCTGCCTCGCGGTtcgcttggaaagaaccaatgaaatgcctccttgtCCCACTGCATGTACTCTAACCCTCCGAGCCTGTACGAGCCTGCTGAGCCCAGTGTGCGCTGACCGAGAAAACTCAGCCAAAGTTGCCGCTGCTGCCATTATTGACGTCTTTCTGTTGGACATATCTGAATACTTGATTACTGTTCAATACCGTGAATACTGTTGGTGTCCTCCAATAATAGGACCAAAGGTTATTGAATGATTAGCTGCTCAGATGTTTGAGGACAAGTTTTTTTCATTGCCTTCCATTATTTGAGGAGCAGAAGAGCTTACAGGCCCTGCGCGGTGTTTCCACTTCCACTGCCTGATTAGACCTCTcttctgtgtggTGGCAAGAGGCGTGGCTTCGAGGAAGTAGGTCAAGGGGTGTGCACAGCTGCAGCGCATTCCATGATTCACCTCAGCAGTACATACCCGGGCTGATCACCCCATTGGCGCCAGATCCTTACAACTACCTGTGTGCTCCATGCTGCTCTGTCCTCCATGCTTGGATTCCTCTATGAATCAGAGTggactctcctctgcctgcctgGCCTCGAGTCTCGGTCCAGTCCTGGATTCTCCGCTGCCTGACCTCCTCGAGCTTCGGTCCAGCCTCGAGCTATCCTGCTCGGACTCTGCCTTCATTGTTCCCTCTAAGTTCATACTGTTCATTAAAACACCTTTTAACATCTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58886 False 546 lncRNA 0.50 3 35559393 35560881
XR_005638902.1 True 2295 lncRNA 0.40 3 35557651 35560888

Neighbor

gene id symbol gene type direction distance location
LOC120556919 NA coding upstream 37703 35517738 ~ 35519948 (+)
tp53rk tp53rk coding upstream 84325 35470994 ~ 35473326 (+)
LOC120557477 LOC103375199,LOC104930306,LOC101473264,LOC108251201 coding upstream 105332 35426361 ~ 35452319 (+)
LOC120558245 NA coding upstream 117512 35439977 ~ 35440139 (+)
LOC120556789 LOC104930304,LOC100703713,LOC103370810,LOC102215223 coding upstream 238482 35316477 ~ 35319169 (+)
sypl2a LOC103367888 coding downstream 621704 36182592 ~ 36210487 (+)
atxn7l2a atxn7l2,LOC103374593 coding downstream 655197 36216085 ~ 36242866 (+)
LOC120557073 LOC103374592,LOC100706250,LOC102300861,LOC101476702,LOC102207203,LOC102780650 coding downstream 682769 36243657 ~ 36249486 (+)
camk1ga LOC108240302,LOC103373651 coding downstream 741058 36301946 ~ 36327932 (+)
LOC120556721 NA coding downstream 805632 36366520 ~ 36368410 (+)
G43877 NA non-coding upstream 16399 35540475 ~ 35541252 (+)
G43874 NA non-coding upstream 27607 35529833 ~ 35530044 (+)
G43859 NA non-coding upstream 98635 35458707 ~ 35459016 (+)
LOC120556905 NA non-coding upstream 219075 35338003 ~ 35338576 (+)
G43811 NA non-coding upstream 331003 35226402 ~ 35226648 (+)
G43893 NA non-coding downstream 24313 35585201 ~ 35585406 (+)
G43896 helz2 non-coding downstream 30149 35591037 ~ 35593586 (+)
G43915 NA non-coding downstream 75913 35636801 ~ 35644114 (+)
LOC120556668 NA non-coding downstream 115310 35676198 ~ 35689917 (+)
G43983 NA non-coding downstream 187168 35748056 ~ 35748334 (+)
LOC120556915 NA other upstream 71416 35463772 ~ 35486235 (+)
G43656 NA other upstream 890469 34665236 ~ 34667182 (+)
LOC120557806 LOC105901862,LOC101061984,LOC103047442 other upstream 2211845 33340284 ~ 33345806 (+)
angpt4 LOC103371190,LOC107384963,LOC105920078,LOC106931961 other upstream 2220884 33262195 ~ 33336767 (+)
G43277 NA other upstream 2345333 33187738 ~ 33212318 (+)
G43924 NA other downstream 103255 35664143 ~ 35666041 (+)
trnac-gca_18 NA other downstream 401651 35962539 ~ 35962610 (+)
fezf2 fezf2 other downstream 1142367 36703255 ~ 36711295 (+)
plekha6 plekha6 other downstream 2399818 37960706 ~ 38096072 (+)
LOC120557027 NA other downstream 2605294 38166182 ~ 38174494 (+)

Expression


Co-expression Network