XLOC_005092


Basic Information

Item Value
gene id XLOC_005092
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 3782621 ~ 3786382 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011071
GAgcaccaggattggccagcccagtcaccagaattgaacattattgagcatgtatggggtaagatggaggaagcATTGGAGATAAATCCAAAAAACTTAATTGACGCTTTCTTTACCATTCCAGAtggcctttgcctttcacatatgccacttctgatatcaaatgatcaactagaagtcaaggtattatgtgttgttcctaaaacttggatcggcgacaagacttttgtcagtgtaCAGCACaaatatcagtttacaatatGAAGCGATATCTGTTTTAGGACTATTTAAAGTCTTCGGAAGttactgagacttttatttcagtatgctgatgtactttctactgaaactgaatattgagtagggggtgtgGCTTTCTTTTTACTCCTCATTCCCTCGTAGCAAAGTAATGGTAAAAGGGgtgtggctaagaatattgtggtTGAAGCGTTaaactgacgtcaacagagaaggaccatGGAAATAATGGTtaaatttgattgaagattaccaaaacagttTTTTCATGTATACGTATATACGTATACGTATACCATGTAACAATGTATGCTCGCAAAATTAACATAGTAAATTGTGATTTCACGCAGACTTGAAAATAATGGAAGCGGTTAACAATGGAAGCCTCGCATTTTTGAAACTTACGTAAAAAAATACGATGGATATAGTAGGCGAACAATGCTTGAATTCAAAGTATTCCATTACCTGAAtgattgttttgaaatattaCTGTCGATTTCTGCTTCAAATGGTCATTTTAATATCTGATAAGGACAATGGATTTGTTAAATGAAGCTTCGTCAACATGATGAATatacaattcgtaacttttgcaATATGAAGCGGTATCtgttttaggactttttaagttTTCGGAAGttactgagacttttatttcagtatgttgatgtacttccaactaaaactgaatattgagtagggggtgtgtgtttttttttatacctcATTTCCTCATAAAAAAACTAACAGTAAAAGGGTGTAGCTAAGAATAAGCCTTAAACTGGCGTCAACAGACAAGGACCACTACTCCAAACACGAAAATAATGGTCaaaatttgattgaagattaccaaaacacaCTGTTTTTTCAGCTTATAtcttaagaataacaatgtgcgctcGCAAAATGAACATAGTAAATTGTGATTTCACGCAGTCTTGAAAATAATGGAAGCGGTTGACAATGGAAGCCTTGCATTTTAACGTTTCGTAAAAAAATATGATGGGCATAGTAGGCGAACAATGCTTGAACTCAAAGTATTTCATTACCTGAATGATTGTTTGGAAATATTACTGTCGATTTCTGCTTCAAATGGTCATTTTAATATCTTATGAGGACAATGGATTCGTTAAGTTAAGCTTCGACAACATGATGAATGTATGTTCGCAATACACgcattccaacacaatctcacggctaTTTGTAACTTTTGCAATATGAAGCGGTATCTGTTTTAGGACTTTTAAGTTTTCGGAAGttactgagacttttatttcagtatgttgatgtacttccgactaaaactgaatattgagtagggggtgtgGCTTTCTTTTACACCTCATTTCCTCATAGAAAACTAACGGTAAAAGGGTGTGGCTAAGAATAAGCCTTAAACTGACGTCAACAGAAAAGGACCGCTTCTCCAAACACGGAAATAATGGTCaaaatttgattgaagattaccaaaaacaaacttttttccaGTGGACTATGTTGCGCAGATTAATTGTTCAtcttaagaataacaatgtgcgctcGCAAAATGAATAATGTAAATTGTGATTTCACGCAGACATGAAAATAATGGAAGCGGTTGACAATGGAAGCCTCGCACACTGACGTCATGTAAAAAACGATGGACATAGTAGGCGAACGATGCTTAAATTACTATTTCATTACCTGAATGATTGTTCAGAGATATTACTGTCGATTCCTGCTtcaatttatcattttaatatctTATAATGGATTTGTTAAGTGAAGCGTCGACAACATGATGAATGTATGTTCGCAATACACACATCCCAACACAAAATCACagcagttcgtaactttttgatttagtgactaatttgtagaatctcattcgtacaatttagtacgatttgcttaatgtcgcaatgatggttgggtttaggggtggggtttggtgccacgcctcctttttaaaaccatACATTTTCAAACGACTGAACTCATAAGAATTCGTACGGATTAGCCATTAAACtatcaaaacataaaatacttacgcttcctcttgagatcaggctgcacATTTACACTACACAGTACATACTTTTTTGTTATGGTGTTCTAGTAATTCAAAAGAAGTACTTACTTGGAGAGTATGCAATTTCGGACGCGGCCATAAATTTCGAGTCATCTCCCACCAATTGGATCTTTTATtgtatagatatataaatatatagtatcGAAAGTGTTGAAGCATTGTGTCCACAGTTTTCTATAGTAAATATTGACATTTTGATAAAATAGCGTGAACAGACCTAGACCTAACACGTAGTAACAGAAATCTGGAGTGGGTGGTGTAAAACTCGCCGTGTTTGACGTCACTACAATTtcttttttccttcagctttctCATAGCATCTGGTTTTAAAGAATGTGAATTTTTCAAGAAAACGTGCTTTCGTCGGGTCTAGTGTGTGTTATGGTTATTAATACATGAgtattaataattgttaatagTCTGTGTGTATGCATTGGGTGAATGGGACGCATTCTGCTGACACTTTtgtacacaaacacaccaaaaacaacacgATTTAAAGGAAAATCTGGCTTATTCGCTTGGGTAAGCGTCCTTTAACTCAGACCTTAGACAATATGAACAGAACTGTAACTGTACTGAGCTGTATTGTTTTAAGCGATGAGAGAGATGCTCTTCAGAGACAGGAACACCGAGTACATCGTATGATGGAAATGTCTTTATTACTAATGAACTTTGGGGGAAATGTGCTACTTTTAGCTGTATTTCTGTCTAGATCAAAACAGAGCGCacagttatatatattttacacatatgtatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtatgttgggaGTGTTCTCTGATCAGAAGAAGTGTATTTGACAATGAAGAGATCACCAAGGCTGTGTTTTTTTTCACAGAGGAACACAATAGGAACTCCAAAATCAAGCGAGAAACACCAGCTCTGATATCTCTCTCTGTATAACCTACTACTTTATGCTTGGTTTAAAGTAAAACAGTGCATGCAGAACTTCTAATGTATCGAGGATGATGTCGGATGTGTCGTGTTTGGAGGGCCAATGAGACTGCACCATTGAATGGACTGACTTGTTTACGAGATGTTACTTCATGATGGTGAATGTTTGAGCTCAAGCAAGTCCTCAGGCAGGCTGGAAATCTCGTCTGGATCCATGTTTGGTGGTAAAGGAGGCTCTCCTGGTTTGTTTGGGGTGAAATGTGTAGGGATAGACGGACTCTAGAATATCAGTCTATCATCTGTGTATGTGGTGCGTGTTGACTGTGAAACAGGTTGTTGGGTCAAAGAAGGGAGGTTTTGCTAGGAGGACATTTTCAGTACAGCTCGATCGAAACATTGATTACTGAAATCTAGCCGTGTCTGGCTTAAAGAAAAATACGTGAAGGAAAAATAAAGCGAAGCaatttaaatgacaataaattGATATTAACGTGAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0050877 nervous system process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0043010 camera-type eye development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048856 anatomical structure development biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0045214 sarcomere organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0048880 sensory system development biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044297 cell body cellular_component
GO:0150034 distal axon cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011071 True 3762 lncRNA 0.37 1 3782621 3786382

Neighbor

gene id symbol gene type direction distance location
XLOC_005091 MAZ coding downstream 3773 3766557 ~ 3778848 (-)
XLOC_005090 tlcd3bb coding downstream 26216 3740605 ~ 3756405 (-)
XLOC_005089 vps25 coding downstream 60664 3714076 ~ 3721957 (-)
XLOC_005088 CABZ01069040.1 coding downstream 76759 3652015 ~ 3705862 (-)
XLOC_005087 NA coding downstream 212540 3569747 ~ 3570081 (-)
XLOC_005093 taok2b coding upstream 2732 3789114 ~ 3840664 (-)
XLOC_005094 NA coding upstream 74082 3860464 ~ 3865234 (-)
XLOC_005095 gdpd3b coding upstream 106650 3893032 ~ 3904011 (-)
XLOC_005096 zgc:92040 coding upstream 139786 3926168 ~ 3940768 (-)
XLOC_005097 eif3c coding upstream 157847 3944229 ~ 3962372 (-)
XLOC_005086 NA non-coding downstream 238605 3519168 ~ 3544016 (-)
XLOC_005083 NA non-coding downstream 497712 3281756 ~ 3284909 (-)
XLOC_005073 NA non-coding downstream 1037980 2703355 ~ 2744641 (-)
XLOC_005072 NA non-coding downstream 1113121 2625669 ~ 2669500 (-)
XLOC_005102 NA non-coding upstream 303355 4089737 ~ 4129820 (-)
XLOC_005103 NA non-coding upstream 357212 4143594 ~ 4169699 (-)
XLOC_005105 NA non-coding upstream 403640 4190022 ~ 4194304 (-)
XLOC_005109 NA non-coding upstream 445475 4231857 ~ 4232505 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G201549 NA non-coding CI01000047 null 4172659 ~ 4174658 (+)