LOC120557027


Basic Information

Item Value
gene id LOC120557027
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 38166182 ~ 38174494 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU59402
GTCAGACATACAAGTGTAGTCTTCTTGGACATTGACATTGTTTAGATTCATCATGGCTGGACACCTGCTGTTAGTCGTCCTCATGTATTCCTTTTCTGAGATGAAAGCAAAAGCTCTTCTTCCACCTAAGCTGACAGTGAATCCAGCAGTgatcacacagacagaaacagtcaCACTGAACTGTCAGACTCCATCACATCTTAATTTGTCTGAGTGTTATTTTCGAATGGTAAGAGGACAAACTGGCAAAAGCCTCCCTTGTCTGCAGACCCTGACGGGAACCGAGCTGCTGAAGATGGCCGATCAGAGTTCACCTGCTGAGGTTCAAGTGACGTGTTTTTACCTTCATGTGTCTCAATCTCCCGACAGTGATCCATCCTCCATCATCATTCGAACTCTTCTTCCATCTAAACTGACAGTGAATCCAGCAGCAATCAACGAGACCGACTCAGTCACCCTGAACTGTCAGACTCCTTcatctgttt
>TU59403
GAAATGTATAATTGTATATACATTATAACCCCTGCAATCATCTTACTTTGAGTGTCTCGCTCACTGGCAGGTTCTGAGAAAGTAAGAAGGCAAGAGCCTCAAAACGAGAATTTTGACACATACCATATGTACTCCATTATTGCTGAAGATCCAGCTGCATCAGGCCTGAAGGATATGGTGTACAGCACGGTGCAGCCACACTGACACTGTTTTATACtggatagagaaagagaggcagacagCCTCAAGGACTGTAAGAAATGTAAACCTTGTGTTTGAAGTTGAGTGGTCTATTCCAGACTAATGTTGGACGACTGTAATGACTTTTTATCAGATCAACCTAACTTCTCTGAACCAAACTTTTACAAAAGTTTCCCCAGTTTAATGCAACTTTCAAGTTGAGTTTTATGATTGACAAAGC
>XM_039797040.1
GTCAGACATACAAGTGTAGTCTTCTTGGACATTGACATTGTTTAGATTCATCATGGCTGGACACCTGCTGTTAGTCGTCCTCATGTATTCCTTTTCTGAGATGAAAGCAAAAGCTCTTCTTCCACCTAAGCTGACAGTGAATCCAGCAGTgatcacacagacagaaacagtcaCACTGAACTGTCAGACTCCATCACATCTTAATTTGTCTGAGTGTTATTTTCGAATGGTAAGAGGACAAACTGGCAAAAGCCTCCCTTGTCTGCAGACCCTGACGGGAACCGAGCTGCTGAAGATGGCCGATCAGAGTTCACCTGCTGAGGTTCAAGTGACGTGTTTTTACCTTCATGTGTCTCAATCTCCCGACAGTGATCCATCCTCCATCATCATTCGAACTCTTCTTCCATCTAAACTGACAGTGAATCCAGCAGCAATCAACGAGACCGACTCAGTCACCCTGAACTGTCAGACTCCTTcatctgtttctgtgtctctgtgttattTCTTCACTCTAAGTGGAGGGAGTGTCAGAGGACTCTCATGTCTGCAGAACCTGACAGGAACTGAGCTGCTGAACATGGCCCATCAGAGTTCACCCGCTGAGGTTCAAGTGACGTGTTTCTACACTGTAAAGGTTGGAGAGAAAAGTTATCCATCGCCACACAGTGACACGTCGTCCATCACCATACACAGGAGGACTGTTGGTACATCAAGTAACACTGatagttttatttctactttccCACCATCAGTGAAACCAGCAGCAGAAACAGATACTAGTATGACTCCAGAATCTGGTGATGAAATAACAGGGAGGACTGTTGGTACATCAAGTAACACTGATAGTTTTATCTCTACTTTCCCAACACCAGTGAAACCAGCAGCAGTTACTAGTATGATTCCTATGACTCCAGAATCTGGTGATGAAATAACAGGGAGGACTGCTGGTACATCAAGTAACACTGATAGTTTTATCTCTACTTTCCCAACACCAGTGAAACCAGCAGCAGAAACGTGGATATGGAAGTGCGTAGCAGTTGTAGCTGGTTGTGGAGTCATGGTGGGCGTCATCTTGCTCGTTTCTGCAATTCTCTGCAACAAAAGAAGAACTGGTTCTGAGAAAGTAAGAAGGCAAGAGCCTCAAAACGAGAATTTTGACACATACCATATGTACTCCATTATTGCTGAAGATCCAGCTGCATCAGGCCTGAAGGATATGGTGTACAGCACGGTGCAGCCACACTGACACTGTTTTATACtggatagagaaagagaggcagacagCCTCAAGGACTGTAAGAAATGTAAACCTTGTGTTTGAAGTTGAGTGGTCTATTCCAGACTAATGTTGGACGACTGTAATGACTTTTTATCAGATCAACCTAACTTCTCTGAACCAAACTTTTACAAAAGTTTCCCCAGTTTAATGCAACTTTCAAGTTGAGTTTTATGATTGACAAAGCACAGCTTGGTTTCCAAACTGCATTTCGATTTAGCTTTATTTTATATCAAGATTTAACATGTATTTAGTTTTACTCATATTAAGCATACGTTTACTTTACTCCTGtttataatttgttttacttttatttgttgtgtgttctgtttttgttatgttttttatgttgtttttgaaTCTGGATATATTTTGTCTGAGACTTCTGTgactacacatatatatatgtaataattATGTTTCTTAGTCACTTTAAGTGTCATTAATTGGTTCATgtcagacacacatacaaatggGAGGTTGTGTAATTTGGAATAGGTCCAGATGAATGAACAGTTTGTTTTAATTGCCAATGATGAAGAGCTGAAAATCAAGagctattgaaaaaaaaaaa
>XM_039797042.1
GTCAGACATACAAGTGTAGTCTTCTTGGACATTGACATTGTTTAGATTCATCATGGCTGGACACCTGCTGTTAGTCGTCCTCATGTATTCCTTTTCTGAGATGAAAGCAAAAGCTCTTCTTCCACCTAAGCTGACAGTGAATCCAGCAGTgatcacacagacagaaacagtcaCACTGAACTGTCAGACTCCATCACATCTTAATTTGTCTGAGTGTTATTTTCGAATGGTAAGAGGACAAACTGGCAAAAGCCTCCCTTGTCTGCAGACCCTGACGGGAACCGAGCTGCTGAAGATGGCCGATCAGAGTTCACCTGCTGAGGTTCAAGTGACGTGTTTTTACCTTCATGTGTCTCAATCTCCCGACAGTGATCCATCCTCCATCATCATTCGAACTCTTCTTCCATCTAAACTGACAGTGAATCCAGCAGCAATCAACGAGACCGACTCAGTCACCCTGAACTGTCAGACTCCTTcatctgtttctgtgtctctgtgttattTCTTCACTCTAAGTGGAGGGAGTGTCAGAGGACTCTCATGTCTGCAGAACCTGACAGGAACTGAGCTGCTGAACATGGCCCATCAGAGTTCACCCGCTGAGGTTCAAGTGACGTGTTTCTACACTGTAAAGGTTGGAGAGAAAAGTTATCCATCGCCACACAGTGACACGTCGTCCATCACCATACACAGGAGGACTGTTGGTACATCAAGTAACACTGATAGTTTTATCTCTACTTTCCCAACACCAGTGAAACCAGCAGCAGTTACTAGTATGATTCCTATGACTCCAGAATCTGGTGATGAAATAACAGGGAGGACTGCTGGTACATCAAGTAACACTGATAGTTTTATCTCTACTTTCCCAACACCAGTGAAACCAGCAGCAGAAACGTGGATATGGAAGTGCGTAGCAGTTGTAGCTGGTTGTGGAGTCATGGTGGGCGTCATCTTGCTCGTTTCTGCAATTCTCTGCAACAAAAGAAGAACTGGTTCTGAGAAAGTAAGAAGGCAAGAGCCTCAAAACGAGAATTTTGACACATACCATATGTACTCCATTATTGCTGAAGATCCAGCTGCATCAGGCCTGAAGGATATGGTGTACAGCACGGTGCAGCCACACTGACACTGTTTTATACtggatagagaaagagaggcagacagCCTCAAGGACTGTAAGAAATGTAAACCTTGTGTTTGAAGTTGAGTGGTCTATTCCAGACTAATGTTGGACGACTGTAATGACTTTTTATCAGATCAACCTAACTTCTCTGAACCAAACTTTTACAAAAGTTTCCCCAGTTTAATGCAACTTTCAAGTTGAGTTTTATGATTGACAAAGCACAGCTTGGTTTCCAAACTGCATTTCGATTTAGCTTTATTTTATATCAAGATTTAACATGTATTTAGTTTTACTCATATTAAGCATACGTTTACTTTACTCCTGtttataatttgttttacttttatttgttgtgtgttctgtttttgttatgttttttatgttgtttttgaaTCTGGATATATTTTGTCTGAGACTTCTGTgactacacatatatatatgtaataattATGTTTCTTAGTCACTTTAAGTGTCATTAATTGGTTCATgtcagacacacatacaaatggGAGGTTGTGTAATTTGGAATAGGTCCAGATGAATGAACAGTTTGTTTTAATTGCCAATGATGAAGAGCTGAAAATCAAGagctattgaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series

RNA

RNA id representative length rna type GC content exon number start site end site
TU59402 False 485 TUCP 0.46 4 38166182 38167218
TU59403 False 421 lncRNA 0.40 2 38173602 38174107
XM_039797040.1 True 1850 mRNA 0.41 12 38166182 38174494
XM_039797042.1 False 1730 mRNA 0.41 10 38166182 38174494

Neighbor

gene id symbol gene type direction distance location
LOC120557039 si:dkey-261m9.15,LOC103462478,LOC102204254,LOC107386469,LOC103379246,LOC101485372,LOC103381127,LOC103395676 coding upstream 15801 38149971 ~ 38150381 (+)
LOC120557051 LOC106958509,LOC107690788,LOC107671222,LOC106963510,LOC107382435 coding upstream 19120 38146740 ~ 38147062 (+)
LOC120557040 LOC106528837,LOC107102779 coding upstream 23914 38141593 ~ 38142268 (+)
golt1a golt1a coding upstream 62236 38097298 ~ 38103946 (+)
LOC120558220 NA coding upstream 209206 37951640 ~ 37956976 (+)
LOC120557047 LOC104932967,LOC104935308 coding downstream 61069 38235563 ~ 38236230 (+)
LOC120557030 NA coding downstream 63184 38237678 ~ 38239157 (+)
LOC120557036 LOC101068541,LOC105888650,LOC105896821,LOC105891059,LOC105893409 coding downstream 66188 38240682 ~ 38241142 (+)
LOC120557043 LOC106528837 coding downstream 82559 38257053 ~ 38257475 (+)
LOC120557050 LOC104935308,LOC104932967 coding downstream 84044 38258538 ~ 38259156 (+)
G44325 LOC104935308,LOC104932967 non-coding upstream 5488 38159937 ~ 38160694 (+)
G44265 NA non-coding upstream 216405 37949515 ~ 37949777 (+)
LOC120556894 NA non-coding upstream 333563 37764777 ~ 37832619 (+)
G44247 NA non-coding upstream 414870 37751067 ~ 37751312 (+)
G44232 NA non-coding upstream 863666 37302224 ~ 37302516 (+)
LOC120557056 samd3,LOC101476819 non-coding downstream 53085 38227579 ~ 38228350 (+)
LOC120557055 NA non-coding downstream 72809 38247303 ~ 38248320 (+)
G44387 LOC104935308,LOC107719244,LOC104932967 non-coding downstream 156886 38331380 ~ 38332050 (+)
G44402 NA non-coding downstream 235508 38410002 ~ 38412477 (+)
G44401 NA non-coding downstream 238333 38412827 ~ 38413939 (+)
plekha6 plekha6 other upstream 70110 37960706 ~ 38096072 (+)
fezf2 fezf2 other upstream 1454887 36703255 ~ 36711295 (+)
trnac-gca_18 NA other upstream 2203572 35962539 ~ 35962610 (+)
G43924 NA other upstream 2500141 35664143 ~ 35666041 (+)
LOC120556915 NA other upstream 2679947 35463772 ~ 35486235 (+)
G44436 NA other downstream 438143 38612637 ~ 38612971 (+)
LOC120557667 LOC102775714,LOC103375741 other downstream 726078 38900572 ~ 38903056 (+)
LOC120557670 NA other downstream 778624 38953118 ~ 38981733 (+)
LOC120557680 NA other downstream 1572679 39747173 ~ 39774250 (+)
G44581 NA other downstream 1639466 39813960 ~ 39821908 (+)

Expression


Co-expression Network